NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCCTGATATTTCCAAGACTTTTATCATGAATGGGTGTTGGATTTT
GTCAAATGCTTTCTCTGCATGTAAGGAAATGATCTTGTGTTTTTTGTCTT
TGAGTTGGATTACATTGATGGATTTGCATATATTGAACCATACCTGAATC
CCTGGAATGAAACCTACATGGTCAGGATAGATGATTGTTTTGATGTGATA
GATGATTGTTTTGATGAGTTCTTGGATTCGGTTAGTGAGAATTATATTGA
GTATTTTTGCATTCATATTCATAAGGGAAATTGGTATAAAGTTCTCTATC
TTGTTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATA
GAATGAATTGGGTAGAGTACCTTCTGCCCCAATTTTGTGGAGTAGTTTGT
GAAGAACTGGAATTAGATCTTTGAAGGTCTGATAGAACTCTGCAATAAAC
CCATCTGGTCCTAGGCTTTCTTTTTGGTTGGGAGACTTTTAATGACCGCT
TCTATTTCTTTAACAGATATAGGATTGTTTAGATCATTAACCTGATCCTG
ATTTAACTTTTGTAACTGGTATCTGACTATAAATCTGTCCATTTCATCCA
GGTTTTCCCAATTTGTTAAGAATAACCCTTTTGTATAAAGATCTGATGGT
GTTTTGGATTTCTTCCAGATCTGGTGGTATGTCTCCCTT

NNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTTTCCTATTTGTATGTCT
GTGATCCCCTTTGCTTGTCTTATTACTAGATAAGACTTCAAGTACTAGGT
AGTAGGAAGAATGGTTATCTTTGGCTTCTGAATTTAGTGAAAATACCTAG
AATTTTTCTCAATTTCAAATAATTATGACTTTGTGTTAGCTATATATTTT
CTTGATAATGCTGAGATATACCCCTTATTTCCCTAGCCTCTCCAGGATTT
TATCATGAATTGATATTGGATTTTTCTCAAATATTTCTTCAGCAATTAAT
AAGATGATCATACAGTTATATTCAATAGTGTTTCTACAGCATTGATCACG
TATATTGATATGCTAGTGATTGACTAAAAATAAATAATGAAATATGTAGC
AAATTAAAAACTTTAGGAAATATTATTAATTTTTTAGTACAGTTGTCATT
TAAAGAAATTCATTTTACAAAGTTTTGTTTGCAAATATTATTCAGAAAGA
CATTAAATTGTATTGTCTTTATTTTAGATTTTTTTTATCTTATTGTTTAG
AGAACTTCATTCATGAGTGCTGTGTTTATTATCATTTTTGCTCTTTCTTC
AACCTTATTCTAAGTTTTCAGNATCTTTCTACCTATTCTCAAATTGTTTT
AGAAAGTATCTTTACTTTCTCTTATAAAGATGCGAATTATTAAATGTC

Query= MSMg01no406_f21.g1 MSMg01no406_f21.g1 CHROMAT_FILE:
MSMg01no406_f21.g1 PHD_FILE: MSMg01no406_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:39 2005
         (519 letters)



>mm_chr4_78609483_78610405
          Length = 923

 Score =  946 bits (489), Expect = 0.0
 Identities = 513/523 (98%), Gaps = 4/523 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctttcctatttgtatgtctgtgatcccctttgcttgtcttattactagataagactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcctttcctatttgtatgtctgtgatcccctttgcttgtcttattactagataagactt 260

                                                                       
Query: 61  caagtactaggtagtaggaagaatggttatctttggcttctgaatttagtgaaaatacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagtactaggtagtaggaagaatggttatctttggcttctgaatttagtgaaaatacct 320

                                                                       
Query: 121 agaatttttctcaatttcaaataattatgactttgtgttagctatatattttcttgataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaatttttctcaatttcaaataattatgactttgtgttagctatatattttcttgataa 380

                                                                       
Query: 181 tgctgagatataccccttatttccctagcctctccaggattttatcatgaattgatattg 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctgagttataccccttatttccctagcctctccaggattttatcatgaattgatattg 440

                                                                       
Query: 241 gatttttctcaaatatttcttcagcaattaataagatgatcatacagttatattcaatag 300
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatttttctcaaatgtctcttcagcaattaataagatgatcatacagttatattcaatag 500

                                                                       
Query: 301 tgtttctacagcattgatcacgtatattgatatgctagtgattgactaaaaataaataat 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtttctacagcattgatcacatatattgatatgctagtgattgactaaaaataaataat 560

                                                                       
Query: 361 gaaatatgtagcaaattaaaaactttaggaaatattattaattttttagtacagttgtca 420
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaatatgtagcaaattaaatcctttaggaaatattattaattttttagtacagttgtca 620

                                                                       
Query: 421 tttaaagaaattcattttacaaagttttgtttgcaaatattattcagaaagacattaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttaaagaaattcattttacaaagttttgtttgcaaatattattcagaaagacattaaat 680

                                                      
Query: 481 tgtattgtctttattttagat----tttttttatcttattgtt 519
           |||||||||||||||||||||    ||||||||||||||||||
Sbjct: 681 tgtattgtctttattttagatgttttttttttatcttattgtt 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 923
Length adjustment: 10
Effective length of query: 509
Effective length of database: 913
Effective search space:   464717
Effective search space used:   464717
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)