BAC Information

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BAC

Clone NameMSMg01-406I16
Chromosome4 (Build37)
Map Location 86,901,396 - 86,901,632
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
Downstream geneMllt3, BC057079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406I16.T7 (MSMg01no406_i16.b1)MSMg01-406I16.TJ (MSMg01no406_i16.g1)
ACCAG504713AG504714
length740719
length of high quality
(start - end)
240 (80 - 319)462 (84 - 545)
definitionCHROMAT_FILE: MSMg01no406_i16.b1 PHD_FILE: MSMg01no406_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:53 2005CHROMAT_FILE: MSMg01no406_i16.g1 PHD_FILE: MSMg01no406_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCGAGAACATC
CGCGGAATTCTGCCATTTACACATGCAGATAGTTCCCCTACTCCTTGTAC
TTTCATGGCTTTCCAGTGGAATCTGTTTTAAAACTATCACCCCGTGAGAC
TGACCATGCTTTGGGTTCCTTTTTGTAAATGCTATTTTCTGCCATCCCTA
CCATGTGACTATTCTTTTGTTTGGAGTGAGGAGCTTCAGGAGCCTTGTTA
CTGTGATGAAGAAAGAGCATGTTTGTTTATATGAAAAATCTGTTAAGATA
TCCGTGGCTCCTCTGGATATCTTGGATTGGCATTCAAGGCTAAGCCACAG
TACTGTGAGGACAACCAAGACAGACAGACTCAATTCTGTTGTCCAAGAAC
TTGTATGAGGAGTCACGCTGAGATTGACCTGAGTACTTTTGGTATATTTC
ATTCTTTAAGAAGCAGAGAGGGCTGGAGAGATGGCCTAGCAGTTAAGAGT
GCTTGCTGCTCTTCCAAAGTTCCCAGGTTCAATTCCCAACACCCACATGG
CAGCTCACAAGCATCTCTAACTACAGTTCCAAGGGATCCAATGCCATCTT
CTGGTCTCTGTGGGCATCAGGCACACAAGTGTTACACAGACATACTTGCT
TTATAAACAACTGCACCAACAAAACAAACAATTCCCCCTACCTTAAAACT
AACCACCATATACTGGGTGTGTGTTGGCTGCATGTTTTTT
TGTTTTTACCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCCAGGATAGTGCA
GCCTTTTGACAGCTCAGCCTTCTCTCCAGCCTCTCTATTTAATATTTTTG
ACATTTATATAACTTGTTATACATTTGGTAATATATCTTTTATTTCTGCA
TACTATTCCCACCATGTGCTTTTACACTAGTCTGGATTCTCTGAATACCA
GATGATGGACAGGCTTGTATTTCTAGTATTAAGCTACTATAAAAGAAATT
GCTATGCACATTTTATAACAAGCCCTTTGTGGACATATATTTTTATTCCT
CTTGGTTAAATTCCCAGAAATAGAATTGCTGAGTCATAAGGCAAAGAATT
ATTTAACTTTATGAAAAGAAAATGCCAAAATATTTTCCCAAACTGGTTGT
GATTTCTTCAGCCTCTGTAAAGCAATGTGTGCACTTCTCAGATAACCCAC
TGTCCGAACAGCACTTGCTGTTCTCTGCCTTTCTTCACTTTAACTGTCTT
GAGTAATCTCCACTAATGTCTCACAGTCCCCCCACCCCACCCCTGTTTTG
GACATTTATTTTTGAAATTGGGTTTTAATGTAAAAAAATGTATATATGGT
CCAAGCTCCCTTTCCATTTCATATTATCCTCCCCCTCCTTTTTTTTCCTC
TTTTTCCCCTTCTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_i16.b1 MSMg01no406_i16.b1 CHROMAT_FILE:
MSMg01no406_i16.b1 PHD_FILE: MSMg01no406_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:53 2005
         (240 letters)



>mm_chr4_86901196_86901834
          Length = 639

 Score =  391 bits (202), Expect = e-113
 Identities = 229/240 (95%), Gaps = 5/240 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagttcccctactccttgtactttcatggctttccagtggaatctgttttaaaactatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagttcccctactccttgtactttcatggctttccagtggaatctgttttaaaactatca 260

                                                                       
Query: 61  ccccgtgagactgaccatgctttgggttcctttttgtaaatgctattttctgccatccct 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccggtgagactgaccatgctttgggttcctttttgtaaatgctattttctgccatccct 320

                                                                       
Query: 121 accatgtgact--attcttttgtttggagtgaggagcttcaggagccttgttactgtgat 178
           ||||||| |||  |||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 accatgtaactctattcatttgtttggagtgaggagcttcaggagccttgttattgtgat 380

                                                                       
Query: 179 gaagaaagagcatgtttgtttatatgaaaaatctgttaagatatccgtggctcctctgga 238
           |||   ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gaa---agagcatgtttgtttatgtgaaaaatctgttaagatatcggtggctcctctgga 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 639
Length adjustment: 9
Effective length of query: 231
Effective length of database: 630
Effective search space:   145530
Effective search space used:   145530
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)