Query= MSMg01no406_o21.b1 MSMg01no406_o21.b1 CHROMAT_FILE:
MSMg01no406_o21.b1 PHD_FILE: MSMg01no406_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:25 2005
(566 letters)
>mm_chr4_75799229_75800193
Length = 965
Score = 1025 bits (530), Expect = 0.0
Identities = 561/578 (97%), Gaps = 13/578 (2%)
Strand = Plus / Minus
Query: 1 ataatgtattggtaagtcttactttttataggaatttatctatttccagacccaatgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ataatgtattggtaagtcttactttttataggaatttatctatttccagacccaatgtgt 581
Query: 61 tttgtctgtcattgttgtcattgcaaaactgttaggtattaaagtatctactcagaacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tttgtctgtcattgttgtcattgcaaaactgttaggtattaaagtatctactcagaacat 521
Query: 121 agaagaaatatctgctcagaaataattttcatttagaaagttgttgaaggtttgcattgt 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 520 agaagaaatatctgctcagaaataattttcatttagaacgttgttgaaggtttgcattgt 461
Query: 181 gctatccataagatttagggggaaaatccataattttcaaattgtaggaatctctcgtat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gctatccataagatttagggggaaaatccataattttcaaattgtaggaatctctcgta- 402
Query: 241 atgtttttcaaactgaatttatcatattactggggaaatgttaaattaggattccactct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atgtttttcaaactgaatttatcatattactggggaaatgttaaattaggattccactct 342
Query: 301 agaaaaggagctacagacaactaatgagtgctgggaaaggggaatcagttcatcacaggg 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agaaaaggaactacagacaactaatgagtgctgggaaaggggaatcagttcatcacaggg 282
Query: 361 gtgagcccctatctggacctctagtccacagtgctcagcctttcaaacatacatatgaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtgagcccctatctggacctctagtccacagtgctcagcctttcaaacatacatatgaaa 222
Query: 421 accaaagtggactaaggccaaataaatatatgtgtttttatatatgtgtgcatatccatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 accaaagtggactaaggccaaataaatatatgtgtttttatatatgtgtgcatatccatc 162
Query: 481 catc--t----------atccatccatccatccatccatgcatatatacatacatgtata 528
|||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 catccatccatccatccatccatccatccatccatccatgcatatatacatacatgtata 102
Query: 529 tatacacatatatatgtgtatataaacaaatgatatgc 566
|||||||||||||||||||||||| | |||||||||||
Sbjct: 101 tatacacatatatatgtgtatatacataaatgatatgc 64
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 965
Length adjustment: 10
Effective length of query: 556
Effective length of database: 955
Effective search space: 530980
Effective search space used: 530980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_o21.g1 MSMg01no406_o21.g1 CHROMAT_FILE:
MSMg01no406_o21.g1 PHD_FILE: MSMg01no406_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:25 2005
(533 letters)
>mm_chr4_75639484_75640422
Length = 939
Score = 957 bits (495), Expect = 0.0
Identities = 525/538 (97%), Gaps = 6/538 (1%)
Strand = Plus / Plus
Query: 2 ctagagaggcaggagatcctgaattgtggaagagtagaanagtgagagatgtgact---a 58
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 202 ctagagacgcaggagatcctgaattgtggaagagtagaaaagtgagagatgtgactatga 261
Query: 59 c---aggcattgcattcggcttttgactctcagtataatgtaagtggagcttcaaattga 115
| | |||||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 262 ctataagcattgcatttggcttttgactctcagtataatgtaagtggcgcttcaaactga 321
Query: 116 ctttcaggtaatgacaactttaagctgaactaaacagccttcactaagtttctttaggaa 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctttcaggtaatgacaactttaagctgaactaaacagccttcactaagtttctttaggaa 381
Query: 176 ctgaagtcaagaggagaataggcacaaacaacataaagaccctcatggacgtgtaggact 235
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 382 ctgaagtcaagaggagaataggcacaaacaacataaagaccctcatggacatgtaggact 441
Query: 236 ctctcaagaccacaattgtctgagagtgagtagagtcaatatgtgtgaaaaatcaaacaa 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctctcaagaccacaattgtctgagagtgagtagagtcaatatgtgtgaaaaatcaaacaa 501
Query: 296 cttgcatttttaacccggatcccagccagtttcaatcttttgttaagggctgctttggct 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cttgcatttttaacccggatcccagccagtttcaatcttttgttaagggctgctttggct 561
Query: 356 gttccaacgttaagaactatcaatttcctagaaaaagcccaatgagacttttagcacaaa 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gttccaacgttaagaactatcaatttcctagaaaaagcccaatgagacttttagcacaaa 621
Query: 416 cagttgaacatagcatttgtctcaggaaacacatcctgacattgaaggtcacagtaaacc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cagttgaacatagcatttgtctcaggaaacacatcctgacattgaaggtcacagtaaacc 681
Query: 476 tcgagctccagtgaaagggaaccagacagagacaaaacagaaagctgcaaaacagatc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tcgagctccagtgaaagggaaccagacagagacaaaacagaaagctgcaaaacagatc 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 939
Length adjustment: 10
Effective length of query: 523
Effective length of database: 929
Effective search space: 485867
Effective search space used: 485867
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
