BAC Information

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BAC

Clone NameMSMg01-406P10
Chromosome4 (Build37)
Map Location 143,969,779 - 144,146,100
singlet/doubletdoublet
Overlap genePramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085
Upstream geneLOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009
Downstream geneLOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406P10.T7 (MSMg01no406_p10.b1)MSMg01-406P10.TJ (MSMg01no406_p10.g1)
ACCAG505034AG505035
length767764
length of high quality
(start - end)
244 (73 - 316)238 (76 - 313)
definitionCHROMAT_FILE: MSMg01no406_p10.b1 PHD_FILE: MSMg01no406_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:28 2005CHROMAT_FILE: MSMg01no406_p10.g1 PHD_FILE: MSMg01no406_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,969,779 - 143,970,022)(144,145,863 - 144,146,100)
sequence
TTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTNATTACCCCAAGCTGGCCTCAGACTCAGAGATGCTCCCACC
TCTGCCACCTAAGGGCTGGTATCAAGGGTTCAATATCACATCTGGAAGTT
TTCTGTAGGTTTTAATGAAAAGTGTACCTTTTCACGTCTGCTGCTTACAT
GTATCATCATGAGGCCGAGGCAGGAGGATGTTCCTGAGTTTGAGACTAAC
CCAGGCTCCATAGTGATTCCCATGTGGGGCTACAGAGTGAGACTCCCCCA
CCCCACCCCAATCTCAGATTTCAGAGTTCCAGGTTACAAGTCTCTCAGTG
ACCTGGTTTCTGTCCTCCTTGACTTTCAACTCTCTAACTATAGCTCCCCA
ACCCTAAACAGCTTTGTTCTACAAACTTGCAAAGTCATTACCCCCTTCCT
TTCTAGTGTTTCTTTCTTCGAAATAAGCATAATTAATTAGGACACGTCAT
TTCTTCTCCATGTATCTACCAAATAATTAACAAACTTCTGCCCTATTTTT
GTCCTCTTTACTCCTTATTAACAATTATGACACCATGTTCTGTTGCTTTT
AAACGATCCTGAAGTTGAAGTCTATACAACTTTTCCAAAATAACTCATTT
CTTTTTGTTATCTTTAGTTTCATTTGTTATATCTTTCTTCCTCTTTTATG
CCATCTTTTTAATTATTGTCATTGACCTTTTATTTACTATATTCACCTTC
CCTTTACCCTTGCTATT
NCCGATGAAGTGGGTAGCCTGGNGGCCGCCTGGTACAAAAATTTAGGNGA
ACTATAGAATTTCCGAGAAATTCACTTCACAGCCAAGTATGACAGGAATC
ATGGAGGATGCTCCTTGCTTGCTGGCTTGTAAGCTCATGGTTAATAGCTC
TGGGCCACATACTAAGGAGTTGTGCTTCTCATGGTGGTATTGACCCTTCT
GCACCAATTAACAAGCATGGTAACCACTCCATACACAGACATGCCCTCTG
GCTTATTTGAACTAGGAAGTTCTTCATTTGAGGCTCTCCTCTCAGATACC
AATATGCTTTATTATTTTGTTAGCCAAAACTAACCAAAATATCTTGATTT
GTTTGGGTCAGTCTTACGGTTTATTCAGGCTCTGCCTTCTCTGAACATAG
AGATTACTATTTGAATAACCTTCACTAAATACCCTGTCTGTGCTAGTATA
CTATTTTTTTTTGTTGTTTGTTGTACCTGTTGCTGCTTACCCCTTTACGC
AACTTAAATTTCCTTACCTTCATCCTCCTTTTGCCTTTCTTTTATTGTTT
TTAAGCTCCCCCCCCCTTTTTTTTTATCTCCTTTTTATCTTCCCTCTTAA
ACCTCTCCTACCTTCGCCCAATTTAGCTCACCTATTACTATTCTTCTTCC
TTATTTTTTTTTTATTTACATAATCTCACATCATTTTCATCCCCTCTTCA
CCCTATACATCCTCTTTTTTTTCCCCTTTTCCCTTATCACTCGCGTTTTT
CTTACTCCTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_p10.b1 MSMg01no406_p10.b1 CHROMAT_FILE:
MSMg01no406_p10.b1 PHD_FILE: MSMg01no406_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:28 2005
         (244 letters)



>mm_chr4_143969579_143970222
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcctcagactcagagatgctcccacctctgccacctaagggctggtatcaagggttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcctcagactcagagatgctcccacctctgccacctaagggctggtatcaagggttca 260

                                                                       
Query: 61  atatcacatctggaagttttctgtaggttttaatgaaaagtgtaccttttcacgtctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatcacatctggaagttttctgtaggttttaatgaaaagtgtaccttttcacgtctgct 320

                                                                       
Query: 121 gcttacatgtatcatcatgaggccgaggcaggaggatgttcctgagtttgagactaaccc 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttacatgtatcatcatgaggctgaggcaggaggatgttcctgagtttgagactaaccc 380

                                                                       
Query: 181 aggctccatagtgattcccatgtggggctacagagtgagactcccccaccccaccccaat 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 aggctccatagtgattcccatgtggggctacagagtgagacacccccaccccaccccaat 440

               
Query: 241 ctca 244
           ||||
Sbjct: 441 ctca 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no406_p10.g1 MSMg01no406_p10.g1 CHROMAT_FILE:
MSMg01no406_p10.g1 PHD_FILE: MSMg01no406_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:28 2005
         (238 letters)



>mm_chr4_144145663_144146300
          Length = 638

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcacagccaagtatgacaggaatcatggaggatgctccttgcttgctggcttgtaagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttcacagccaagtatgacaggaatcatggaggatgctccttgcttgctggcttgtaagct 379

                                                                       
Query: 61  catggttaatagctctgggccacatactaaggagttgtgcttctcatggtggtattgacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 catggttaatagctctgggccacatactaaggagttgtgcttctcatggtggtattgacc 319

                                                                       
Query: 121 cttctgcaccaattaacaagcatggtaaccactccatacacagacatgccctctggctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 318 cttctgcaccaattaacaagcatggtaaccactccatacacagacatgcccacaggctta 259

                                                                     
Query: 181 tttgaactaggaagttcttcatttgaggctctcctctcagataccaatatgctttatt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tttgaactaggaagttcttcatttgaggctctcctctcagataccaatatgctttatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)