BAC Information

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BAC

Clone NameMSMg01-408N14
Chromosome4 (Build37)
Map Location 10,271,302 - 10,271,640
singlet/doubletsinglet
Overlap genenone
Upstream gene4933402J24Rik, Asph, Gdf6, 4930448K20Rik
Downstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408N14.T7 (MSMg01no408_n14.b1)MSMg01-408N14.TJ (MSMg01no408_n14.g1)
ACCAG506472AG506473
length766813
length of high quality
(start - end)
242 (70 - 311)339 (73 - 411)
definitionCHROMAT_FILE: MSMg01no408_n14.b1 PHD_FILE: MSMg01no408_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:58 2005CHROMAT_FILE: MSMg01no408_n14.g1 PHD_FILE: MSMg01no408_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGCGCTAAACGACTCACATTTTCTTACTTCCGCGGAATTCCTC
CTAATTTCTAAATAGAGACTCCATAAAATATTTATCTGCCCATGGAATGG
TAGAAAGCTTATTGATTTTTTATAATCACAAATTCAGTTTCTTTCTTTTT
TTTAATTAAATTAATTTATTTTTTACATTCCATATTCCAGTCCCTGTCCC
CCTCCCTGATCCACTGTCCAACTGTTCCACATCCCACCCCCACCCCTTCT
CCACATGAATGTCCTCACCCTCCTTTCCATCTGACCCCTAAACTCCCTGG
GGTCTCCAGTCNCNTTAGGTTTCAGTTTCTATGAGAAAACCCCATAGCTC
GCCAGCTGGATAATGATTTCCTATCCTTCCATAGTAATCTGCAGATGAAA
ATAAAAAACCCAGAGAGTTCTATAACTCCCTTAAAATCTGATTGTTAGTT
AAGGGTAAGATAATTCATCAAGGATCAAAACCATATATTGTTGACATTGG
GTTCTCCCCTTGATTACTAATTAAGCAAGAATAGTATGATATGCAGTTCA
TGTTTTATGTGTTATGGCACTAATACATCCATTTTAAACGGTTATCATCA
TGTGCCATAAATCCTGTAGGAATACATTTTACCCGGCTAAAAATGAACTC
CTTTTTTTTTTTTTTTCTTCACTAATTTAATCACATTCATACTTTCTTTC
TCCTTCGCACTTTTTCCCAACACCCTTACTCTATCCTCTTCTTTTCTTAT
CCCTCTTTTTCTCTTC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTCTGTTTGGTATACCAAGGACAAAGT
GGGGAAAGAAAACGAAGAAAACAGAAAGAATATGAAGATAACAGGTCATG
ATGAGGTTTAAGTTACTGGAATGTGTTCAGGCCTTGTCCGGAACTCAGTG
GAGAGTCACTAAGGTATTTCAAGAAGAGAAATTGAGAAACTAGTTTCATT
ACGAATAACAACAGCAATAACAAAAAAGGGACAAGACTGAAAACAGGAAG
ATGTAATGGACACAAAGCATGGCTATTAATTAATGCAATATTATCAGATG
AATTATGCAAATAATAGCCAACCTTTGCCTGAGTTAACTCACAAGACCTT
TGTGACAATATGGTGAACGAACTTAGATCGATCCCAGGAGTTAATTTAGC
TGCCCTTAGATTTTATATATGTGATGGACATTTTACTACTCTGCCCTTCC
CTTATCTTTTTTTATGTCACCCTCTTCCTTTTTCACTGCCTTTATTTTTC
ATCCCCCTTTTTTCTCCTTCATCTTCCATGTTCCCGCTCTCCCTTCTCCC
TCCTCTCTTTCTCCCCTCTTTCTTTCTTCTTCCTCCTTCTTCTTTTTTAT
TCCCCTCTTCCTTTTTTTTCTTCTTTTTTCCCTCTTCCCCTTTCTCTCCC
CTTTCCCTTTCCTCCTCCCCCTCATCTCTTTTATCGTTCTTTCCCTTATC
TCTCTTCCCTTTACCCTTCCCTCTTTTCTCTCCCTCTTATCTCCTTTGTT
TACCTCTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_n14.g1 MSMg01no408_n14.g1 CHROMAT_FILE:
MSMg01no408_n14.g1 PHD_FILE: MSMg01no408_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:58 2005
         (339 letters)



>mm_chr4_10271102_10271840
          Length = 739

 Score =  617 bits (319), Expect = 0.0
 Identities = 334/339 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtctgtttggtataccaaggacaaagtggggaaagaaaacgaagaaaacagaaagaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtctgtttggtataccaaggacaaagtggggaaagaaaacgaagaaaacagaaagaata 260

                                                                       
Query: 61  tgaagataacaggtcatgatgaggtttaagttactggaatgtgttcaggccttgtccgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tgaagataacaggtcatgatgaggtttaagttactggaatgtgttcaggccttgtcctga 320

                                                                       
Query: 121 actcagtggagagtcactaaggtatttcaagaagagaaattgagaaactagtttcattac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 actcagtggagagtcactaaggtatttcaagaagagaaattgagaaactagtttcattat 380

                                                                       
Query: 181 gaataacaacagcaataacaaaaaagggacaagactgaaaacaggaagatgtaatggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaataacaacagcaataacaaaaaagggacaagactgaaaacaggaagatgtaatggaca 440

                                                                       
Query: 241 caaagcatggctattaattaatgcaatattatcagatgaattatgcaaataatagccaac 300
           |||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaatcatggctaaaaattaatgcaatattatcagatgaattatgcaaataatagccaac 500

                                                  
Query: 301 ctttgcctgagttaactcacaagacctttgtgacaatat 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttgcctgagttaactcacaagacctttgtgacaatat 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)