NNTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACTCATTTGCTAACTATTAGGAAATAATTGTTTGGCATTAA
TATTGTAAGACTGATTTCCCAGTTTACCTCTTCTCTCTCCTCTCTTTTCA
ATGCTGGAAACACAAGTAAGTAGTGAACGTATACAAAGGATACCTGAGCT
TGCTAACCAAGACCTATAATCTTAGCTACTCAGTAAACTGTGACAGGAAA
AGTCAGTCCAAGATTCTCAAGAGCTACAAAATTAGTTCAAGGCCATTCTA
AGCAACTAAGGAAGAGCCTGCCATTAAAATAAAATGACAAGGATAAGGGT
GAGGTCGACGACACAATAGTTAATCATTTCTCTGGTTTGAGCAAGGCCCC
ATGCTTACATTCTGACTTAACAATGAAAGAAAGAGAAAACTACAGGGACA
TCATGACATATATCCTGACAAACATCTGGTTTTATAACATTATTTACAAG
AACATCAGAGTAGCGCCAGGAGTTTCTGTATTCAATCTTTGCCTAAACAA
AGAGCAACTTCTTTGCACCTTCCCTGTGGAAATACAAAAGCAGGTCTCAT
ACTATCAAAAATCAGTCTTCTGAAAGCTGGCAAATTTCTTATTTGGTGGG
TACCCAAAAAACTTTTAGTTCCAATAAGTTGGCCATAATTTTGTTGACCA
TTGCCCTTGCCCCGCCAGGGAGGGGAAACTTCTATGGCAAAAAAAGTAAA
AAGTGGATGAGGCCGGGGTTTTCTGTCTA

CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATTCTGTAATGAGGCTAGCATG
CCACTTACTCTGGAAGGATTCCATTCCATCCAAGGGAACTTCTTGCACCT
GGAGTTTCCTTGCTGTGCAAGTGTATTATAAATTTAACCCACTTTACTCA
ATCATTTCACTTTTTACAGCCTCTACTTTTGTTATACCTGATTTTGAATG
TTATTTTGTATTAAACAAACTTTAATTAAACTTCAAACTTGTTTTGAGTT
ACTTGCTTCAGGCTTAAATTTTACAAGATATGGCAAAGATTATATTATGT
AAGATATAAATTGGTCTCTCTCTCCAACCTTGTCTCTGTAAATGAATTAC
ATTTGTACTTAGCATGACCACAAACATAGTTCTGAGCACATTAAAGACTT
TGATCATGTATAATGTGATTGATCACTAACTTGAATGTCTTGATTATCTT
TAGCAGNTTATAATAATAACTTTTCTAAGAATANGATTTTGCCAATTTAT
CTGTTAATTTTGAGACTTTTTAAAATATGGTTTGAAATAAAGTTCCTTAA
GAACCAAAAAAATTCCACCCTATAAACACTCCTTGGAGAGGCCGGGAATC
CCTTTAAAAATTTTTTGATAGGGGCTTTTTCAAACGCCCCGTTTAAATGA
ACTTTTCTCTCCCAATCTTTCCCATTACGTTACATTACACTTTTTACACA
CTTTAAAAACTACAACCT

Query= MSMg01no409_b19.b1 MSMg01no409_b19.b1 CHROMAT_FILE:
MSMg01no409_b19.b1 PHD_FILE: MSMg01no409_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:21 2005
         (459 letters)



>mm_chr4_96289363_96290221
          Length = 859

 Score =  872 bits (451), Expect = 0.0
 Identities = 454/455 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctactcatttgctaactattaggaaataattgtttggcattaatattgtaagact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gaattctactcatttgctaactattaggaaataattgtttggcattaatattgtaagact 600

                                                                       
Query: 65  gatttcccagtttacctcttctctctcctctcttttcaatgctggaaacacaagtaagta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gatttcccagtttacctcttctctctcctctcttttcaatgctggaaacacaagtaagta 540

                                                                       
Query: 125 gtgaacgtatacaaaggatacctgagcttgctaaccaagacctataatcttagctactca 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 539 gtgaacgtatacaaaggatacctgagcctgctaaccaagacctataatcttagctactca 480

                                                                       
Query: 185 gtaaactgtgacaggaaaagtcagtccaagattctcaagagctacaaaattagttcaagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtaaactgtgacaggaaaagtcagtccaagattctcaagagctacaaaattagttcaagg 420

                                                                       
Query: 245 ccattctaagcaactaaggaagagcctgccattaaaataaaatgacaaggataagggtga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ccattctaagcaactaaggaagagcctgccattaaaataaaatgacaaggataagggtga 360

                                                                       
Query: 305 ggtcgacgacacaatagttaatcatttctctggtttgagcaaggccccatgcttacattc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggtcgacgacacaatagttaatcatttctctggtttgagcaaggccccatgcttacattc 300

                                                                       
Query: 365 tgacttaacaatgaaagaaagagaaaactacagggacatcatgacatatatcctgacaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgacttaacaatgaaagaaagagaaaactacagggacatcatgacatatatcctgacaaa 240

                                              
Query: 425 catctggttttataacattatttacaagaacatca 459
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 catctggttttataacattatttacaagaacatca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)