BAC Information

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BAC

Clone NameMSMg01-409C07
Chromosome4 (Build37)
Map Location 63,146,811 - 63,147,056
singlet/doubletsinglet
Overlap geneWhrn
Upstream geneBspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna
Downstream geneAtp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409C07.T7 (MSMg01no409_c07.b1)MSMg01-409C07.TJ (MSMg01no409_c07.g1)
ACCAG506698AG506699
length779826
length of high quality
(start - end)
248 (73 - 320)246 (79 - 324)
definitionCHROMAT_FILE: MSMg01no409_c07.b1 PHD_FILE: MSMg01no409_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:23 2005CHROMAT_FILE: MSMg01no409_c07.g1 PHD_FILE: MSMg01no409_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAGAACATGCGCGGAA
TTCCAGNGGCTTGCTAAAGACCTCTCATCCGTCAGTAAGGATAAGAAGAT
TTATGTCCAATCTTTTGCCACCAAGTGAAATTTCCAATGCCAGGAATGGG
TTACAACTAATTGAGCTGTCAGCTAAGGAGGCCGCATGGAAACCCCAAAA
TAAATTAGGCCATTGACGAGGCTATTAGTTGTTCTCCTCAAACTGATGGT
AAGGCCCCACTGCTGAAGACAACACCTACACATTTCATTGAACATGGAAA
AGTTCAGCTGGTGCTGAACTATTATTTTCTCCCACACTGACTAGCATCCA
TAGTCCTGGAAGGTGTCTGAACACTACCAGAGGAGAAAGGTAAACACAAA
CTAGATATAAACCCCTCCATCTACAATGGTGACCTACACTATACGCTGGG
TAAGTAATGGCACAAATGTTTAAGAGTAACTAACCACTCTCTGATTGGAT
TTAAGGCCTGTTCCATAACATGTAACCCATACCTGGCACTGCTCTGGTGG
TCAAGAACCTGGGACTAGATAGGCCATGGAGCTGGGGTAAAAACAAACAC
TATTGCTTGCCTTTTAAAAAATTACAAATTATAACTATATGACTCCCAAC
AACATTCTGCTATACTTGTATATTTGTGGCTTGCTCAGCCATCTCCACTG
AACGTTTCTTCTGTTGGAATGGGAACACTACCTTAAATTTGACCTTGTCA
CAAGTAATACAATTAAAAAAATCTTTGTT
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGAGAGGGGTGCATAAAGAG
ACCTGATCTCAAACCAAGCAAAGCCAAGCAAAACAAACAAACAAACAAAC
AAACAAACACAACCCAAAAATCCAACACTGACAAAGGTCAGGGCGTCACC
AGTGAGGAAGAACAGAAAGTTAAAAGGACAGTTAAAGAGTCAGTGTGACT
CTTCTCCCTAAAGTCTACCATGAAATACAACCACCTAGGAAAGGCAGGGT
GGCCAGAACCTCAGTTTTCTGCCTTTTTGTGAGCTTCCTCATCAAATGGC
TGCACAGAGATGGATAAGGTAGACCGAAGTGATGACAGAGAGCATACATG
CGGGGGTGGTGGGTGATTACACTCTTTTCTATTTTTTTCTATTTTCAGTC
TTTTTATTTCGTATCATCAATAATATTATTTTTTTCTCTCTTTTCTTTTT
AAATCCCAATAATATTCCTCTTTTTTCTATAATTACTTTTTTTTTTTCAA
TTTCGATTTTTTATTTCTTACCCATTATTTTACTTTTTTTCTTCACATCC
TTACAATTTTTTATATCTGTCCATATATATATTATTTACGCTCTTCTTCC
TTTGTTCTTCTAACTTTTTTTTATCTTTTTTTTTCTCCTTCTTTCACTTC
TCTTCCCCTTCACATATTTCCAGCTATTCTTCACACACTTCACATTTCTC
CCTCTACTCGTACTATTTTTCTTCATCATTTGTCTATCTTTCTTTTGTAG
TCGCGCGTATTGTATCTTCCTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_c07.g1 MSMg01no409_c07.g1 CHROMAT_FILE:
MSMg01no409_c07.g1 PHD_FILE: MSMg01no409_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:23 2005
         (246 letters)



>mm_chr4_63146611_63147256
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagagaggggtgcataaagagacctgatctcaaaccaagcaaagccaagcaaaacaaac 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagtgaggggtgcataaagagacctgatctcaaaccaagcaaagccaagcaaaacaaac 260

                                                                       
Query: 61  aaacaaacaaacaaacaaacacaacccaaaaatccaacactgacaaaggtcagggcgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacaaacaaacaaacaaacacaacccaaaaatccaacactgacaaaggtcagggcgtca 320

                                                                       
Query: 121 ccagtgaggaagaacagaaagttaaaaggacagttaaagagtcagtgtgactcttctccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagtgaggaagaacagaaagttaaaaggacagttaaagagtcagtgtgactcttctccc 380

                                                                       
Query: 181 taaagtctaccatgaaatacaaccacctaggaaaggcagggtggccagaacctcagtttt 240
           ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 381 taaagtctaccatgaaatacagccacctaggaaaggcaaggtggccagaacctcagtttt 440

                 
Query: 241 ctgcct 246
           ||||||
Sbjct: 441 ctgcct 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)