BAC Information

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BAC

Clone NameMSMg01-409C24
Chromosome4 (Build37)
Map Location 153,474,708 - 153,475,152
singlet/doubletsinglet
Overlap geneTrp73
Upstream geneLOC100042089, Ajap1, BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27
Downstream geneWdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409C24.T7 (MSMg01no409_c24.b1)MSMg01-409C24.TJ (MSMg01no409_c24.g1)
ACCAG506732AG506733
length754733
length of high quality
(start - end)		464 (55 - 518)444 (73 - 516)
definitionCHROMAT_FILE: MSMg01no409_c24.b1 PHD_FILE: MSMg01no409_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:27 2005CHROMAT_FILE: MSMg01no409_c24.g1 PHD_FILE: MSMg01no409_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTGCCATGCTGAGGGTTACAGACTGATCCCAGAAAAC
AAAAAAACAAAAAAACAAAGATTCACTTATTTATTTGGGTTATAAAATCA
ATCAACGAAAATATTCAACCACCAAAGGTACAGATCCACAGGGACCAATT
GGAAACAGTTAACAATTTTCAAAAATTAATGAAAGATATTAACTCGCCAA
GGCCTACAATTGCATTAAGTACGTATAAGTTAAGTGATTTGTTCAAACAT
TACAAGGAGATTAAACAGTCCAAGATGTCTAACAACTGAAGCAGAAAAAG
AGTTAACTCTTGTAGAACAAAAACTGTAAGAAACATATGTGGATTGAACT
GATCCTAAACTTGATTGTATGTTGGTCATTTTGCCTTCAATTCATTCTTC
TGCTGGGCTCATTATGCAAACAGAAGATAATATTATGGAATGGATTTCCT
TAGCTCATAAACAAAGTANAAAAATTAGGTCATATTATACAGAANAGAGT
TGCGNTAATTATAAAAAGAAAATAAGATTATGCCCATTGTCNAGGACAGA
TCTGGGTGAAATTGTGTACCGCTTACCGACGCTGAGACATGTCCTTTTGG
GGGGAACATGAAAAAGGCAAGAATTTGTTAAATATTTTGGCAAATTATTA
AAAAGGGCGGAAAACCAGGATATCAGTTTAAAAAAAAATCACCCTTTTTT
CCTA

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGATGCTCTTCTCCCCCAACTTAATG
GCTGTCAGAAACCAGTGCAGTCAGTGAGTTCAAGTTCTCACATGCTCCCG
AGTCTCCACATCCTTGCTTGTGAAGTTGAGGTGATGGAAAGGCTAGAATG
GAGAGGACCCTGGGAGATCGGTGCAGCCTCCTGGGTACCAGCTTGTCTGC
CTGGCCTTGTGCAGAGGGGTGGGCCAGGCCTCGACATCTAACCATTCCCG
AGTCTCATTGGAGTAGAGTGTGTTGTAAGATTAAAGCAAATGGGATGGGC
AGGAGCGGATGAACCCCTAGTGGGTCTGAGGAGAACCCTAGGCATGGTGA
GGGACGCCCTTGTGGCCTTAGCTTCCTGTGGCCATGTAGATGGCATAGCA
GAGCCTAGACAGTTGTGATAGGTAAAGAGGGAACTGAAGGTCTCTGGGGC
TCGATGTCCTGGGTTTGTAGCCCCTCCTGGTCTTCCTAGTTGGGAGGTTT
TCAGGATCCTTTTATCTTCTGATTTGAGGGGCCCCCTCTCTATAAGGGGT
AATTGGACCAACCTAAATCCACAAGTGGTGTTTTTCCCCCGGGTTGTGTA
TTTTCTCCCTGGGTTAATTCTTTTTCTTTCCCTTGTTGTGTACTTTTCTC
CACTTCTTGTCGTTTCTCTTTTCTTATTAAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_c24.g1 MSMg01no409_c24.g1 CHROMAT_FILE:
MSMg01no409_c24.g1 PHD_FILE: MSMg01no409_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:27 2005
         (444 letters)



>mm_chr4_153474508_153475352
          Length = 845

 Score =  845 bits (437), Expect = 0.0
 Identities = 443/445 (99%), Gaps = 1/445 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgatgctcttctcccccaacttaatggctgtcagaaaccagtgcagtcagtgagttca 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 645 catgatgctcttctcccccaacttaatggctgtcagaaaccggtgcagtcagtgagttca 586

                                                                       
Query: 61  agttctcacatgctcccgagtctccacatccttgcttgtgaagttgaggtgatggaaa-g 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 585 agttctcacatgctcccgagtctccacatccttgcttgtgaagttgaggtgatggaaagg 526

                                                                       
Query: 120 gctagaatggagaggaccctgggagatcggtgcagcctcctgggtaccagcttgtctgcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gctagaatggagaggaccctgggagatcggtgcagcctcctgggtaccagcttgtctgcc 466

                                                                       
Query: 180 tggccttgtgcagaggggtgggccaggcctcgacatctaaccattcccgagtctcattgg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tggccttgtgcagaggggtgggccaggcctcgacatctaaccattcccgagtctcattgg 406

                                                                       
Query: 240 agtagagtgtgttgtaagattaaagcaaatgggatgggcaggagcggatgaacccctagt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agtagagtgtgttgtaagattaaagcaaatgggatgggcaggagcggatgaacccctagt 346

                                                                       
Query: 300 gggtctgaggagaaccctaggcatggtgagggacgcccttgtggccttagcttcctgtgg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gggtctgaggagaaccctaggcatggtgagggacgcccttgtggccttagcttcctgtgg 286

                                                                       
Query: 360 ccatgtagatggcatagcagagcctagacagttgtgataggtaaagagggaactgaaggt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ccatgtagatggcatagcagagcctagacagttgtgataggtaaagagggaactgaaggt 226

                                    
Query: 420 ctctggggctcgatgtcctgggttt 444
           |||||||||||||||||||||||||
Sbjct: 225 ctctggggctcgatgtcctgggttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 845
Length adjustment: 10
Effective length of query: 434
Effective length of database: 835
Effective search space:   362390
Effective search space used:   362390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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