BAC Information

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BAC

Clone NameMSMg01-409K20
Chromosome4 (Build37)
Map Location 49,716,899 - 49,717,390
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Downstream geneLOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409K20.T7 (MSMg01no409_k20.b1)MSMg01-409K20.TJ (MSMg01no409_k20.g1)
ACCAG507105AG507106
length771758
length of high quality
(start - end)		496 (50 - 545)525 (67 - 591)
definitionCHROMAT_FILE: MSMg01no409_k20.b1 PHD_FILE: MSMg01no409_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:07 2005CHROMAT_FILE: MSMg01no409_k20.g1 PHD_FILE: MSMg01no409_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATCAAGGGATTATCCATTGATTAGGTCAGAGCCCTTAGGAC
TCAATCACTTCTCCAGAGCTCATAATTTGCAACCAAACCCCCAACATAAG
AACTGTTAGGGAACATTATAAATTCAAATACCACATGGACATATAATACA
CCATGAGAAATAAAAGAGCCACAAGGACTTAATAATAATTAACTTTAATT
GTCAAAGAAATGGTAATGTCAAATGTTGGAGAAGATATGGAAAATAAGAA
TGCATATTGATTTAATTACTTTGGAAAACAATTTGGTGATATTTTGCGTA
GTTGAACACTTATATTAAAATCCAAGAACACTCCCAAACAATTTCTCCAC
AAATACATCAAGAAATATGATAAATAAGGCTGTTCATAACCACAAAACTT
GGAAAGAACTCAAATGATGTTTGACAAAACCTTTAATACATAAATTATGG
AATAGTTACATGAATAGGATATTACATAACGAAGACATATGTGTTAGAAA
TAGAGTGATATATGTACAACTCTTAGCAATATGCTATTGGGGGGGAGAGA
CATTCCTCCCAACTTACAGAGTAATTTATTTTGTACATGTAAACACACTC
ATACTAAAAAATGCATGTTTTAAAAATACGCATGGGGGGATGAAACTACT
TTTTAAAAAATAAATCCGGGAATGATACTTTCCAAATTCAAAAGGCGGTT
TGGAAAGGGAGAAAAAAAGAA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAACACA
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGATCACTCCTCC
ATTGTTGGTGGGAGTTCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGACATATATCCAGAAGATGTCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCTCCAAGAAACTCACACCATATGTACTCACTGATAAGTGGATATTT
AGCCCCAACCTTGGATACCCAAGAAATAAGATATAATTTGCTAAACACTG
GAACTCTAAAAAAAGAAGACTGATAGGGGAGCACCATCCCCCTCCCTTAA
TTTGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_k20.b1 MSMg01no409_k20.b1 CHROMAT_FILE:
MSMg01no409_k20.b1 PHD_FILE: MSMg01no409_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:07 2005
         (496 letters)



>mm_chr4_49716695_49717590
          Length = 896

 Score =  920 bits (476), Expect = 0.0
 Identities = 488/492 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcaagggattatccattgattaggtcagagcccttaggactcaatcacttctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcaagggattatccattgattaggtcagagcccttaggactcaatcacttctc 264

                                                                       
Query: 65  cagagctcataatttgcaaccaaacccccaacataagaactgttagggaacattataaat 124
           ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 265 cagagctcataatttgcaaccaaccccccaacataagagctgttagggaacattataaat 324

                                                                       
Query: 125 tcaaataccacatggacatataatacaccatgagaaataaaagagccacaaggacttaat 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaaacaccacatggacatataatacaccatgagaaataaaagagccacaaggacttaat 384

                                                                       
Query: 185 aataattaactttaattgtcaaagaaatggtaatgtcaaatgttggagaagatatggaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aataattaactttaattgtcaaagaaatggtaatgtcaaatgttggagaagatatggaaa 444

                                                                       
Query: 245 ataagaatgcatattgatttaattactttggaaaacaatttggtgatattttgcgtagtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ataagaatgcatattgatttaattactttggaaaacaatttggtgatattttgcgtagtt 504

                                                                       
Query: 305 gaacacttatattaaaatccaagaacactcccaaacaatttctccacaaatacatcaaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaacacttatattaaaatccaagaacactcccaaacaatttctccacaaatacatcaaga 564

                                                                       
Query: 365 aatatgataaataaggctgttcataaccacaaaacttggaaagaactcaaatgatgtttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatatgataaataaggctgttcataaccacaaaacttggaaagaactcaaatgatgtttg 624

                                                                       
Query: 425 acaaaacctttaatacataaattatggaatagttacatgaataggatattacataacgaa 484
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaaaacctttaatacataaattgtggaatagttacatgaataggatattacataacgaa 684

                       
Query: 485 gacatatgtgtt 496
           ||||||||||||
Sbjct: 685 gacatatgtgtt 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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