BAC Information

Click to search

BAC

Clone NameMSMg01-409P24
Chromosome2 (Build37)4 (Build37)
Map Location 25,531,228 - 25,531,620126,394,265 - 126,394,428
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5
Downstream geneLOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409P24.T7 (MSMg01no409_p24.b1)MSMg01-409P24.TJ (MSMg01no409_p24.g1)
ACCAG507352AG507353
length767732
length of high quality
(start - end)		396 (52 - 447)164 (59 - 222)
definitionCHROMAT_FILE: MSMg01no409_p24.b1 PHD_FILE: MSMg01no409_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:35 2005CHROMAT_FILE: MSMg01no409_p24.g1 PHD_FILE: MSMg01no409_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:35 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,531,228 - 25,531,620)(126,394,265 - 126,394,428)
sequence
NNNNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTCTCCAGCCAAGACCTTAGCCTCACACTTCCTGAGAT
TTGCTCATTTATTCACTCAATCTTTATCAAGATGTTCTGAGTACTTCTGC
AGAGCAACAAGATTGTGGACACTCAGCACCCACCACAGAGCAAACTGAAA
CTTACATTTTACCTCCACACACCCATCCCTAGCATCTCTAGCCTCACTCC
AAGCCAGACGTGGGAACATGTGGGTACAATGTGTCTGCGGCTTGATTCTC
TGTAGAAAAAGAGATCTAATAAAACTCCAAGTCCCTGCTGGGGACAGACT
CCTCTGATAAAGGAGAAGAGGAATAAATCAGAACTTGTGTAAATGTCAGC
TACTTGTTCTGTTTCGCTCAGTAACCCAGTGCCAAGCCTTGATCCAGGAT
TAGGATGGCTCCTGATTGCTAACCTCCTAGACTCCTGATAGAAGAAAAAT
ACAAAGTCTTTTGTATTATGAAAAATTANGAAGATAATTATTCCAAATTC
CCATTCTAATCTTCAGGTCAATGCTGGCAATTGGTTGGTTGGTTGGTNGG
ATGGNNNGATCAAACAAAATTTTCCTTGAGACCTTGCCGCCTATAATCCC
TCTTTTTACCTTTTGTTCTATAATTTCCCGGTTTTTTTTCCTTTTTGTAC
AATTTTTACTGTTTCCTCTTCCCCTTCTGTTCCTATTTTTCTCACCTTTT
TTCTCCCCTCTAACACA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCTTACATTATCTATACAGTTTGAACTTCCCAACTGCCTGCAA
GTATCATTCATACCATTTCACAAAAAAATGGAGACTGCCTTTCACAGAAG
TTAACTCAGCAGCTCAGTGCTGCATATGGGAAACAGCGCGTGCTAAGACC
CTGATTTCTCCTCCTTAGATGCCCTGGTTATAGAATGCAACTCAACTGCA
TATTAAAGTTTCTCTAGNCGCCTCTTTCTCCCANNNNCCGGGGTNNNGTG
AGNNCGNCTGTAAGGNNNNAGNNNNNNNNAGAGCCTGCTNANANNNNNNN
NNTGGNNNNNNNNNNTNNGNNNATNTCANNTTTNTNTTNTNTTTTTNTTT
TTTTTTTTTTGGNNNNNACTNNNTCNNNTCTTTCCTCCCCNNNNTNTNTN
CTNNTTNTAGNTTTNTGGNTTTNTTNTTTTTCCTTTTGGGGGNTTNATTN
NTTNNTCGTTNNNTTTTTNTTTTTCGGTTNTTTTNTTTTTTTTTTTTTTC
TTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTCTCTTCTCTTTT
TTTTTCTTTTTTTTCCTTTTTCCCTTTCTCTCCCTTTCTCTCCTTCTTCT
TTTTTTTCTTCTTCTTTTCTCCCCTTTTTTTTTTTCTCTTTTTTCTTTTC
CTTTTCCTCTTCCTTTCCTCTTCATTTCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_p24.b1 MSMg01no409_p24.b1 CHROMAT_FILE:
MSMg01no409_p24.b1 PHD_FILE: MSMg01no409_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:35 2005
         (396 letters)



>mm_chr2_25531025_25531820
          Length = 796

 Score =  698 bits (361), Expect = 0.0
 Identities = 385/393 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtctccagccaagaccttagcctcacacttcctgagatttgctcatttattc 63
           |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ggaactctgcctccagccaagaccttagcctcacacttcctgagatttgctcatttattc 537

                                                                       
Query: 64  actcaatctttatcaagatgttctgagtacttctgcagagcaacaagattgtggacactc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 actcaatctttatcaagatgttctgagtacttctgcagagcaacaagattgtggacactc 477

                                                                       
Query: 124 agcacccaccacagagcaaactgaaacttacattttacctccacacacccatccctagca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 agcacccaccacagagcaaactgaaacttacattttacctccacacacccatccctagca 417

                                                                       
Query: 184 tctctagcctcactccaagccagacgtgggaacatgtgggtacaatgtgtctgcggcttg 243
           ||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct: 416 tctctagcctcactccaagccagacgtggaaacatgtgggtacaatatgtccgcggcttg 357

                                                                       
Query: 244 attctctgtagaaaaagagatctaataaaactccaagtccctgctggggacagactcctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 attctctgtagaaaaagagatctaataaaactccaagtccctgctggggacagactcctc 297

                                                                       
Query: 304 tgataaaggagaagaggaataaatcagaacttgtgtaaatgtcagctacttgttctgttt 363
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 caataaaggagaacaggaataaatcagaacttgtgtaaatgtcagctacttgttctgttt 237

                                            
Query: 364 cgctcagtaacccagtgccaagccttgatccag 396
           |||||||||||||||||||||||||||||||||
Sbjct: 236 cgctcagtaacccagtgccaagccttgatccag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no409_p24.g1 MSMg01no409_p24.g1 CHROMAT_FILE:
MSMg01no409_p24.g1 PHD_FILE: MSMg01no409_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:35 2005
         (164 letters)



>mm_chr4_126394065_126394628
          Length = 564

 Score =  317 bits (164), Expect = 2e-91
 Identities = 164/164 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttacattatctatacagtttgaacttcccaactgcctgcaagtatcattcataccattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttacattatctatacagtttgaacttcccaactgcctgcaagtatcattcataccattt 260

                                                                       
Query: 61  cacaaaaaaatggagactgcctttcacagaagttaactcagcagctcagtgctgcatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaaaaaaatggagactgcctttcacagaagttaactcagcagctcagtgctgcatatg 320

                                                       
Query: 121 ggaaacagcgcgtgctaagaccctgatttctcctccttagatgc 164
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaacagcgcgtgctaagaccctgatttctcctccttagatgc 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |