BAC Information

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BAC

Clone NameMSMg01-410F12
Chromosome4 (Build37)
Map Location 86,133,163 - 86,133,549
singlet/doubletsinglet
Overlap gene4930500O09Rik
Upstream geneA930009N24, LOC668052, Adamtsl1
Downstream geneRraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410F12.T7 (MSMg01no410_f12.b1)MSMg01-410F12.TJ (MSMg01no410_f12.g1)
ACCAG507614AG507615
length777766
length of high quality
(start - end)
204 (116 - 319)387 (76 - 462)
definitionCHROMAT_FILE: MSMg01no410_f12.b1 PHD_FILE: MSMg01no410_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:03 2005CHROMAT_FILE: MSMg01no410_f12.g1 PHD_FILE: MSMg01no410_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTGTCTCTCGCTTAGGCACTGTTTTATTACTGTAAAGGACAA
CAGGACCAAGGCAACTCTTTCTTTAAAAAAGAATGGAGGTAAGGGGCATT
TTATTGGGAGGTTGCTTACAGTTTCAGAGTGTTAGTCCATTCTTATCACG
TGGTATGGAGCAATAAATGAGAGCTGCATTCTGATCCACAGGCAGAGAGA
GTATGACAGAGACAGAGAGAGAGACAGAGACAGAGAAAGAAAGAGACAGA
GAGAGAAATAAAGGAAACTTATATGATTGAGACAAAGAAAGAGGCAGAAA
GAGACAGAGAGACAAAGACAGAGAAACAGAGACAAAAAGAGAAAGGAGAC
AGAGACAAAGAGAGAGAGACAGAAAGAGACTAAGACAGAGAGAGACAGAG
AAAGAAAAAGAGAGACAGAGAGAGAGATAAAAGGAGACAGAGACAGAGAG
ACCTAGACCAAGATAGAGACTTGAGAAAGACAGAGAGAAAGAGAGTAGGC
CTTGCTTTGAAACCTCAATGCCTGCCCCCCCCCCCCCCCCCCCGTGAAGT
ACTTCCTCTAATAAGGTCTCACCTTCCTATTCCTTCTAATCCTTATCACA
GAGGTTCACTCTCCCCTTCTGACTAACGTATCCTTCTACCTTTTACCTTA
CTAATTCACTCTCTTATTCCCATCCCAATCTACCCGTATTTCCCCGACCA
TATCGTTTTTTCTTATTCCTTTCCCCC
NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACATCAGAGCCTTAATGCTAATGTA
CTAGATAGCTCTGAAAGAGATTATTGTAGTTGTTAGCTTTCTTAACTATT
ACCAAACACTCTCTTACTAATAATTCTTGCCTGTTGAAGTGGAGGGTCGG
GTCTATATTGGTCTGTCTTACTTAAAGGTGGTTAAGTTAAAGGTAGAAGG
AGAGGGCCTGCTGCTGGAAAAGGAATTTTTGGCTTTGTGGAAGGTTCCAT
AACAACTTGGCTGGAATATTTAGACTGGTAATAAAGAATGAGCCCTTCTG
TTGTGGCGCTATGGATTTTGAATTAGAGACCCCACAAATATTCAAGATAT
GCAAAGAACATACTTAATTTTCAATTGATCCTGCTATACTCTAGTTGGTT
TCCAAGTTGAGATTGCTAGGATCTAGGGTCATGTATGTATGGAGTTGCCT
CTGTCCATGTCCTGGAGGTTCCTATTGCCATTTTTAGGTCAAAGTCGTTT
CTCCTAAGTTCCTGCCTCTTCCCTCCCTTGTCATTTTTCCCTTCACATTG
TTGGTTTTTGCCCTCTTCCCTCCTTACTCCCCGTTTTATCCTCCCCAGCT
TCTTTGTTTTCCCTTTTACTTCCCTCTCCCCGCCCTCTTCTTCCCTCTCT
TCTCCTTCCTCCCTTCATTCTCCCTTCTTCATTCCTTTACCCCTTTTCTT
CTTCCCTTTCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_f12.g1 MSMg01no410_f12.g1 CHROMAT_FILE:
MSMg01no410_f12.g1 PHD_FILE: MSMg01no410_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:03 2005
         (387 letters)



>mm_chr4_86132963_86133749
          Length = 787

 Score =  717 bits (371), Expect = 0.0
 Identities = 383/387 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatcagagccttaatgctaatgtactagatagctctgaaagagattattgtagttgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 acatcagagccttaatgctaatgtactagatagctctgaaagagattattgtagttgtta 528

                                                                       
Query: 61  gctttcttaactattaccaaacactctcttactaataattcttgcctgttgaagtggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gctttcttaactattaccaaacactctcttactaataattcttgcctgttgaagtggagg 468

                                                                       
Query: 121 gtcgggtctatattggtctgtcttacttaaaggtggttaagttaaaggtagaaggagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gtcgggtctatattggtctgtcttacttaaaggtggttaagttaaaggtagaaggagagg 408

                                                                       
Query: 181 gcctgctgctggaaaaggaatttttggctttgtggaaggttccataacaacttggctgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gcctgctgctggaaaaggaatttttggctttgtggaaggttccataacaacttggctgga 348

                                                                       
Query: 241 atatttagactggtaataaagaatgagcccttctgttgtggcgctatggattttgaatta 300
           | |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aaacaaagactggtaataaagaatgagcccttctgttgtggcgctatggattttgaatta 288

                                                                       
Query: 301 gagaccccacaaatattcaagatatgcaaagaacatacttaattttcaattgatcctgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gagaccccacaaatattcaagatatgcaaagaacatacttaattttcaattgatcctgct 228

                                      
Query: 361 atactctagttggtttccaagttgaga 387
           |||||||||||||||||||||||||||
Sbjct: 227 atactctagttggtttccaagttgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)