BAC Information

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BAC

Clone NameMSMg01-410K04
Chromosome4 (Build37)
Map Location 14,478,435 - 14,478,987
singlet/doubletsinglet
Overlap geneSlc26a7
Upstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688
Downstream gene1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410K04.T7 (MSMg01no410_k04.b1)MSMg01-410K04.TJ (MSMg01no410_k04.g1)
ACCAG507838AG507839
length740740
length of high quality
(start - end)
543 (80 - 622)551 (82 - 632)
definitionCHROMAT_FILE: MSMg01no410_k04.b1 PHD_FILE: MSMg01no410_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:26 2005CHROMAT_FILE: MSMg01no410_k04.g1 PHD_FILE: MSMg01no410_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGAGAGAGATG
CGCGGAATTCTCTATCTTACATACTTTTCAAGGTCATTAACCAAGTAAAG
TCAAGGTAAAAAATGACTGGAACTGACTTTAATTTTTTTTTTTTTTGTTC
TGTAGTTTTTAAGCATTGGCGCTTTTGCCCAGCGTCTTGAGAATGCACAC
CATAGTAAGAATATCAGCCATTTTTGGAATGATCCTTACCAATTTTTCAT
AAAAATATCAGTTGCTTTATGACAAGATTAGGGGCCTGTCTCCTGGAAGT
TATTTTCAAATTTTGGTTTTATTTTATTTTTCATATAACTTTCCAAGACG
CAACTGGCATTTCTTAATCCCTTCAGAACTTTGAGGTAAGATGGCACATT
TTGGATCTTGCCATAAGAAATTCAGCTGATGAAGTTATTTAAATACCACG
TATTTACATTATACATGAATAATACCAGGAGGAACCCTTAAGAAACTGAA
GCTCATTATGCACACGTAAGTTGGCAGGCTGCGGTTGTGTCCCTGTGATC
CTTTATTAAGTGCTCTTGGAAAGGCTCTTAANACTTCATCTTTAGAAGCA
AGATACAATGCCATTTTCCAGCCACAAACATATTTCAAAGAAAGAGCCCT
GGACAATGATTATCCTAAGCATTTTTTTTTTCACAGACGCTAAACCAATT
CAGGTATATTACGATTATCCAACCCTTCTCATCCTTAATG
NNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTACACTGGGGCATCGA
GCTTTCAAGGGACCAAGGGCCTCTCTGCCCATTGATGCTGGAAAAAGCCA
TCCTCTGCTACATATGTGGCTGGAACCTTGGTTCCCTCCATGAGTACTCC
TTGGTTGGTGGTTTACACCCTGGGAGCTCTGGTTAGTTGATACTGATCTT
CTATTACCTGAGGACCTAGCAATACCACTCCTGGGCATATATACCCAAAA
GATGCTCCAACATATAACAAGGACACAGGCTCCACTATGCTCATAGCAGC
CTTATTTATAATAGCCAGAAACTGGAAAGAACCCAGATGTCTTTCAACAG
AGGAATGGATACAGAAAATGTGGTTCCATTTACTCAATGGAATACTACTC
AGCTATTAAAAACAGTGAATTCATGAAGTTCTTAGGCAAATGGATGGAAC
TAGAAGATATCATCGTCAGTTAGGTAACCCAGTCACAGCAGAATACACAT
GGTATGCACTCACTGATAAGTGAATATTAGCCCAGAAGTTCCGGATACCC
AAGATACAATTCACAGATTACTTGTAGCTCAAGAAGAAAGAAGACCAAAG
TGTGGGTGTTTTGGTCCTTCTTAGAAGGGATAACAAAATACTCCCAGGAG
CAAATACAGACTTAGTTCGTAACATACATGTACGCTATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_k04.b1 MSMg01no410_k04.b1 CHROMAT_FILE:
MSMg01no410_k04.b1 PHD_FILE: MSMg01no410_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:26 2005
         (543 letters)



>mm_chr4_14478245_14479187
          Length = 943

 Score =  967 bits (500), Expect = 0.0
 Identities = 535/553 (96%), Gaps = 10/553 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggtcattaaccaagtaaagtcaaggtaaaaaatgactggaactgactttaattttttt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaggtcatcaaccaagtaaagtcaaggtaaaaaatgactggaactgactttaattttttt 250

                                                                       
Query: 61  tt----------tttttgttctgtagtttttaagcattggcgcttttgcccagcgtcttg 110
           ||          |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 251 ttgttgttgttttttttgttctgtagttttcaagcattggcgcttttgcccagcgtcttg 310

                                                                       
Query: 111 agaatgcacaccatagtaagaatatcagccatttttggaatgatccttaccaatttttca 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agaatgcacaccatagtaagaatatcagccatttttggaatgatccttaccaatttttca 370

                                                                       
Query: 171 taaaaatatcagttgctttatgacaagattaggggcctgtctcctggaagttattttcaa 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 taaaaatatcagttgctttatgacaagattaggggcctgtctcctggaagttattttcaa 430

                                                                       
Query: 231 attttggttttattttatttttcatataactttccaagacgcaactggcatttcttaatc 290
           |||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 431 attttggttttataaaatttttcatataactttccaagacgcaacttgcatttcttaatc 490

                                                                       
Query: 291 ccttcagaactttgaggtaagatggcacattttggatcttgccataagaaattcagctga 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ccttcagaactttgaggtaagatggcacattttggatcttgccataagaaattcagctga 550

                                                                       
Query: 351 tgaagttatttaaataccacgtatttacattatacatgaataataccaggaggaaccctt 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgaagttatttaaataccacgtatttacattatacatgaataataccaggaggaaccctt 610

                                                                       
Query: 411 aagaaactgaagctcattatgcacacgtaagttggcaggctgcggttgtgtccctgtgat 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aagaaactgaagctcattatgcacacgtaagttggcaggctgcggttgtgtccctgtgat 670

                                                                       
Query: 471 cctttattaagtgctcttggaaaggctcttaanacttcatctttagaagcaagatacaat 530
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 671 cctttattaagtgctcttggaaaggctcttaaaacttcatctttagaagcaagatacaat 730

                        
Query: 531 gccattttccagc 543
           || ||||||||||
Sbjct: 731 gcaattttccagc 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)