Query= MSMg01no411_m19.b1 MSMg01no411_m19.b1 CHROMAT_FILE:
MSMg01no411_m19.b1 PHD_FILE: MSMg01no411_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:58 2005
(582 letters)
>mm_chr4_39785763_39786744
Length = 982
Score = 1081 bits (559), Expect = 0.0
Identities = 574/579 (99%), Gaps = 2/579 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaatggattgccaa-atgattttacttcttaattaagttggtatatctgaggtg 63
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatggattgg-aacatgattttacttcttaattaagttggtatatctgaggtg 263
Query: 64 aattttaatatctaatatttgtttttctattaaaaaaactttgattgcaagtatttaaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aattttaatatctaatatttgtttttctattaaaaaaactttgattgcaagtatttaaat 323
Query: 124 taagcttcattgagaggaagcagacattcattactttaacatgtaaaatgtgacagactt 183
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taagcttcattgagagggagcagacattcattactttaacatgtaaaatgtgacagactt 383
Query: 184 tcaaagtatctttgtctggtcatgtattgagctctctataagcatcgcttgcctggtatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcaaagtatctttgtctggtcatgtattgagctctctataagcatcgcttgcctggtatc 443
Query: 244 aagtacaacaaacatttttaatacttcattcttttctcttctcccttcatccaccactca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagtacaacaaacatttttaatacttcattcttttctcttctcccttcatccaccactca 503
Query: 304 ggcaatttcaattacagaagtcatgtgggcttccctaaggacaaatatagatttcaaaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggcaatttcaattacagaagtcatgtgggcttccctaaggacaaatatagatttcaaaat 563
Query: 364 gtcaactgcactagcaggaatgtgattgctttcccatttcttctctggcatttcttgttc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtcaactgcactagcaggaatgtgattgctttcccatttcttctctggcatttcttgttc 623
Query: 424 atatgctcatagccatatctttctgaagggtttaacagtcttattgcttgcagatgatct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atatgctcatagccatatctttctgaagggtttaacagtcttattgcttgcagatgatct 683
Query: 484 gcagtactactgttaatatttcctttctcttgagaatattctagattttagggaaacacc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcagtactactgttaatatttcctttctcttgagaatattctagattttagggaaacacc 743
Query: 544 caacgctcaaatgtaggaacgtctccagcattttgaaaa 582
||| |||||||||||||||||||||||||||||||||||
Sbjct: 744 caatgctcaaatgtaggaacgtctccagcattttgaaaa 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_m19.g1 MSMg01no411_m19.g1 CHROMAT_FILE:
MSMg01no411_m19.g1 PHD_FILE: MSMg01no411_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:58 2005
(246 letters)
>mm_chr4_39932816_39933461
Length = 646
Score = 474 bits (245), Expect = e-138
Identities = 245/245 (100%)
Strand = Plus / Minus
Query: 1 tatacaaaacggctaaaagccattcaaaactgaatggctttaataaagaattttttagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tatacaaaacggctaaaagccattcaaaactgaatggctttaataaagaattttttagac 330
Query: 61 aatcagcaaaactcaatcaattaaaatacaagataatattaaagggtaggtgttattcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aatcagcaaaactcaatcaattaaaatacaagataatattaaagggtaggtgttattcaa 270
Query: 121 gaaaaaaggaaaatttcataagtggatagtgaattgtgtgggaaaatgagaaacaatgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gaaaaaaggaaaatttcataagtggatagtgaattgtgtgggaaaatgagaaacaatgtt 210
Query: 181 aataagtacataaataaaaataaaaatattaccttccaaagcctagcacttgtggatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aataagtacataaataaaaataaaaatattaccttccaaagcctagcacttgtggatgtt 150
Query: 241 gatgg 245
|||||
Sbjct: 149 gatgg 145
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
