Query= MSMg01no411_o18.b1 MSMg01no411_o18.b1 CHROMAT_FILE:
MSMg01no411_o18.b1 PHD_FILE: MSMg01no411_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:07 2005
(553 letters)
>mm_chr4_78781470_78782422
Length = 953
Score = 1023 bits (529), Expect = 0.0
Identities = 544/549 (99%)
Strand = Plus / Plus
Query: 5 gaattcataagattagcttgtgcttagataaaaacacacataaggtcatgtagtggttgc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataagattagtttgtgcttagataaaaacacacataaggtcatgtagtggttgc 264
Query: 65 tccaaccccttcaagggaattcttttgcctggaaactgatttgatcaagggaaatagaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccaaccccttcaagggaattcttttgcctggaaactgatttgatcaagggaaatagaaa 324
Query: 125 aataggtaagaaacattcattgtttcttttaaaagaataactcaaggtcattgtatttct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aataggtaagaaacattcattgtttcttttaaaagaataactcaaggtcattgtatttct 384
Query: 185 gatcacttaaaaacattgaactattgtagtgtattttgttgacctatttatcaggcagca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatcacttaaaaacattgaactattgtagtgtattttgttgacctatttatcaggcagca 444
Query: 245 taaattaacattagaacaatttcctttatttcaattgttttatttcctgctgtgaaatct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 taaattaacattagaacaatttcctttatttcaattgttttatttcctgctgtgaaaact 504
Query: 305 tatcttcaggtttaaaggtcaggaaattcattttctaggacaacactaaacttaccttga 364
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 tatcttcaggttttaaggtcaggaaattcattttctaggacaacactaaacttatcttga 564
Query: 365 ctttaatattgttctagagaaacttgctttctctatatcctagatggtgatattttcaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctttaatattgttctagagaaacttgctttctctatatcctagatggtgatattttcaaa 624
Query: 425 tttaaattgggaatagagaatcagttttttaaagggaggttaatcatgaaatggatggaa 484
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 625 tttaaattgggaatagagaatcagtcttttaaagggaggttaatcatgaaatggatggaa 684
Query: 485 ttagaaaatgtcatattgagtgaggtaaaacagtcacaaaagaacacacattgtatgcac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttagaaaatgtcatattgagtgaggtaaaacagtcacaaaagaacacacattgtatgcac 744
Query: 545 tcactgata 553
|||||||||
Sbjct: 745 tcactgata 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_o18.g1 MSMg01no411_o18.g1 CHROMAT_FILE:
MSMg01no411_o18.g1 PHD_FILE: MSMg01no411_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:08 2005
(548 letters)
>mm_chr4_78969228_78970170
Length = 943
Score = 959 bits (496), Expect = 0.0
Identities = 534/548 (97%), Gaps = 5/548 (0%)
Strand = Plus / Minus
Query: 1 tcttcactaacatttcatttctttgaatttttttttttaccaacaagtgtttatcattaa 60
|||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 743 tcttcactaacatttcctttctttgaa--tttttttttaccaacaggtgtttatcattaa 686
Query: 61 agcacccaaattacatagtgtcttaattttaatatgcaaatattgactgtgttagtacag 120
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 685 aacacccaaattacatagtgtcttaattttaatatgcaaacattgactgtgttagtacag 626
Query: 121 tattatcttattctgcaagtttgcttgaatttttgactgttattaagaagttatttacaa 180
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 625 tattatcttattctgcaaatttccttgaatttttgactgttattaagaagttatttacaa 566
Query: 181 taacctgttttgaacttgagtaattattttccattactttttcaatagtttgcactatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taacctgttttgaacttgagtaattattttccattactttttcaatagtttgcactatag 506
Query: 241 acctaaccatacagaaatgaaaactcttcctttaaataataaccttaaatcttcatgcag 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 acctaaccatacagaaatgaaaattcttcctttaaataataaccttaaatcttcatgcag 446
Query: 301 aagaatagagaagtaacaaaaaagaaaataaatattgtgttaataatgagttttctaaga 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagaatagagaagtaacaaaaa-gaaaataaatattgtgttaataatgagttttctaaga 387
Query: 361 aattcctttatctttgatgctttcttcatttattctctagagaatgtaaaatgtcatcct 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 386 aattcctttatctttgatgctttcttcatttattctctagagaatgtaaaatgttatcct 327
Query: 421 gctaaaaaaaaaaggtctttaaaccaattacacaaggttaattatataaattaccatgcc 480
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gctaaaaaaaa--ggtctttaaaccaattacacaaggttaattatataaattaccatgcc 269
Query: 481 taatatgatagccacatcactaagtgggtgtataatgagtagtatctaactagaagcaat 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 268 taatatgatagccacatcactaagtgggtgtataatgagtggtatctaactagaagcaat 209
Query: 541 taatttca 548
||||||||
Sbjct: 208 taatttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 943
Length adjustment: 10
Effective length of query: 538
Effective length of database: 933
Effective search space: 501954
Effective search space used: 501954
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
