ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGAGACAGACGTGCTCAGAAACATTAGTCTCATGTTGGGGCTCAGA
GGCATTGTATCCACAGAGCATTAGGGAACCAGGAATGTTAACCACTCGCT
CAGGGGCCTCTCCTCAATGGAATGATTACCTGTTTTCCTGCCCCGAAGGC
TAGGAGTGGATATTGTTGAGAATCTAGAGACCTTTCTGCTCTCAGTGGTG
GCAGGCCTCACCCACCTTTTGCTATAGAAGCAGACCTCACCCAAATTCCC
CAGAATGGTTACTCCAGACTTTCTCTCTTAGGCTGTTGCCTTTAGCTCCG
GTTAACCCATCCTTAGAGGAGATGTCACGGGTACTTTATCACCTGCTGAC
CTCTATGCTATTAGTCAGAGACCACACTAGATTCTAGGCCCCTAAACTAT
AGAACCTACCCCCAGGGTCACATGTACTTTGCAAAGGAGTTTCTATATAG
TCAAACCTGGAATTGGTGACTATTGTCTGGAAACCCGGAATGGAAATGGC
TGTACTTTCCCCCAAACTGTACTGTGTTAAATATGCTTACAAGGAACTGC
CTGGCATTAGAATCCCCAGGGTCTAATCCAGCTTGACAATGTCAATCTGA
ACCAAGTTCTTATTCTCATCTCTTTGCAGGTTCACTGTTATGCCTGNACA

ATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAATAGTCAAGATTATGTGTATTGAGACT
CCTATATGCTTTTTTTTACAACTTTCCTATCAATTACAAACTATTCTAAA
ATTGCAAGATAATTTAAATAAATATAAATTAAAATACATCTATGAACTGT
TTATATTTTTCAATTTAGACATTTTAAACGGAAAATCCTATGAATTCTGC
TGGCTCCACTTTTTAGTGACCCACTGGTCAACAGCTATAAAGTGGTAAAA
CAAAGTTCAAAGTCATACTAGCTCTTAGTATTTTAATGAGTAGTGGCTAC
AATATCTAATATTTAAGGTGATAAATCTCTCTAAAATGTGTCTTAAGCAA
CATTTTATCTTTGGTAACCAGCATTAATTCATTACAATTTTAATTGATTA
AGTCAATTTAATAAAAATTATTTGCCACCTATGAGCAGGTTCTCTGGACA
CTGATGTAACAATTTTGCAGGAACTCACGTCTAGTAAAACAATTACCTAT
TTACTTGTCCCTTAATTTATTGAATATCCCGCTACTTTTTGTAAAGAAAT
TTTCCTTAAAAAGCGGCTTAAATGCGGCAAACAATCCTCCCCCCTTTTTT
CCTACACCCCATATTAATGGCAAAAAACTGGTATATCTAAGATGGGCAAA
GGTTTTCAAATAAAACATN

Query= MSMg01no413_a18.g1 MSMg01no413_a18.g1 CHROMAT_FILE:
MSMg01no413_a18.g1 PHD_FILE: MSMg01no413_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:37 2005
         (377 letters)



>mm_chr4_52873289_52874065
          Length = 777

 Score =  700 bits (362), Expect = 0.0
 Identities = 374/378 (98%), Gaps = 1/378 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatagtcaagattatgtgtattgagactcctatatgctttttttt-acaactttcctat 59
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 200 aaatagtcaagattatgtgtattgagactcctatatgctttttttttacaactttcctat 259

                                                                       
Query: 60  caattacaaactattctaaaattgcaagataatttaaataaatataaattaaaatacatc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caattacaaactattctaaaattgcaagataatttaaataaatataaattaaaatacatc 319

                                                                       
Query: 120 tatgaactgtttatatttttcaatttagacattttaaacggaaaatcctatgaattctgc 179
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 320 tatgaactgtttatatttttcaatttagacattttaaactgaaaatcctatgaattctgc 379

                                                                       
Query: 180 tggctccactttttagtgacccactggtcaacagctataaagtggtaaaacaaagttcaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 380 tggctccactttttagtgacccactggtcaacagctataaagtggtaaaacaaaattcaa 439

                                                                       
Query: 240 agtcatactagctcttagtattttaatgagtagtggctacaatatctaatatttaaggtg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agtcatactagctcttagtattttaatgagtagtggctacaatatctaatatttaaggtg 499

                                                                       
Query: 300 ataaatctctctaaaatgtgtcttaagcaacattttatctttggtaaccagcattaattc 359
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 500 ataaatctctctaaaatgtgtcttaagcaacattttatctttggtaaccaacattaattc 559

                             
Query: 360 attacaattttaattgat 377
           ||||||||||||||||||
Sbjct: 560 attacaattttaattgat 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)