Query= MSMg01no413_a21.b1 MSMg01no413_a21.b1 CHROMAT_FILE:
MSMg01no413_a21.b1 PHD_FILE: MSMg01no413_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:37 2005
(581 letters)
>mm_chr4_134395174_134396154
Length = 981
Score = 1046 bits (541), Expect = 0.0
Identities = 572/583 (98%), Gaps = 2/583 (0%)
Strand = Plus / Plus
Query: 1 atatacagagaaaacctgtctcaaaaaaaa--aaaaacaacaacaacaaaacaacaacaa 58
|||||||||||||||||||||||||||||| || ||||||||||| |||| ||||||||
Sbjct: 199 atatacagagaaaacctgtctcaaaaaaaaccaacaacaacaacaaaaaaaaaacaacaa 258
Query: 59 caaaaacaaacaaacaaacaaaaacaactgatcattcgtgagtacatgacaatgtaatca 118
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 259 caaaaacaaacaaacaaacaaaaacaactgatcatacgtgagtacatgacaatgtaatca 318
Query: 119 gctgaatgaacttccacgaggggatgattcccaagagaaatgcacacttgcctccagact 178
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 319 gctgaatgaacttccacgaggggatgattcccaagagaaatacacacttgcctccagact 378
Query: 179 cacaggggatattaccactgatcattttgatactagtagccaactacaatccaaaaataa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cacaggggatattaccactgatcattttgatactagtagccaactacaatccaaaaataa 438
Query: 239 attaacctagtaaataaacccaattttagagctctgcaccaagtaatactactcagcact 298
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 attaaccgagtaaataaacccaattttagagctctgcaccaagtaatactactcagcact 498
Query: 299 cacaggaaataagccattcaggagaaagcataaaccatccccgaaaagctagtagaaaca 358
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 499 cacaggaaataagccattcaggagaaagcataaactatccccgaaaagctagtagaaaca 558
Query: 359 cagataaaacgtcagaaaagctgataactgatctagaaacagacaataaaaaagaaaaga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cagataaaacgtcagaaaagctgataactgatctagaaacagacaataaaaaagaaaaga 618
Query: 419 gccaggcatggtggcatgtctctttaatctcagtacaggccagcgtgacctatgtagaga 478
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 619 gccaggcatggtggcatgtctctttaatctcagtacaggccagcgtgatctatgtagaga 678
Query: 479 gaccctgtatcaaaatttaaaaagaaacagcagcaggaggctaggaggtagtgagtcaga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaccctgtatcaaaatttaaaaagaaacagcagcaggaggctaggaggtagtgagtcaga 738
Query: 539 aaaacagcctaagaatgttgacactggataggacatcttacca 581
||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 739 aaaacagcctaagaacgttgacactggataggacatcttacca 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_a21.g1 MSMg01no413_a21.g1 CHROMAT_FILE:
MSMg01no413_a21.g1 PHD_FILE: MSMg01no413_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:37 2005
(446 letters)
>mm_chr4_134576492_134577337
Length = 846
Score = 505 bits (261), Expect = e-147
Identities = 319/365 (87%), Gaps = 43/365 (11%)
Strand = Plus / Minus
Query: 125 ccctggtggctcccaagtgctgcatacacacatacatatagggggtgaggg--------- 175
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ccctggtggctcccaagtgctgcatacacacatacatatagggggtgagggaaatgcata 787
Query: 176 -------------t------catgcctataatgtcag---------------tgcagggg 201
| ||||||||||||||||| ||||||||
Sbjct: 786 catgcatatgggatgaggggcatgcctataatgtcagcactggggagatggatgcagggg 727
Query: 202 gatcagaagttagggtcatcttgagctacaaagcgacccaatgaggccaccatgaactac 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gatcagaagttagggtcatcttgagctacaaagcgacccaatgaggccaccatgaactac 667
Query: 262 acaaaaccctgccgcaaaaatacaccaaacaaacaaaaagccagaaaagcaaagaagcta 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 acaaaaccctgccgcaaaaatacaccaaacaaacaaaaagccagaaaagcaaagaagcta 607
Query: 322 gagtaagcagaaaagtgggcatgctagcttctgctgggggtcctgtgtctgcccttcgga 381
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 606 gagtaagcagaaaaatgggcatgctagcttctgctgggggtcctgtgtctgcccttcaga 547
Query: 382 acaaaacctgcccagtgtcatgccttccatatgaccacccttctcctccaggtcagctat 441
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 546 acaaaacctgcccagtgtcatgccttccatatgaccacccttctcctccaggtcagctgt 487
Query: 442 cccga 446
|||||
Sbjct: 486 cccga 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
