XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTA
TAGTTTGGCATAAAGGGGGCAGCATCTTCATTGTTTACAGTTTTTGATCG
CTATGGGTAATGTCTCCCTTGGACTGAGAAATGTGTTAGAGTTTGTGCCT
CATCTATTGGAAAGTTAACTGTATCATATCTTAGGACAAATAGCCAGATA
GATGAGAAAGCTGGTTGCAATTCTTCCCACAGACTTTAGATGACAGTACT
TGCTCCCAGTTAGAGGTGAACCCTTTATCATTAGCCACAGCTATATAGAA
AAGTCAGTGTCTTATTTATTAGAAATGTAGAAATGATTCCTAGATGCTCC
ATGGAGACAGGCTAGGGTGGTATAATTATCACTGCTAAGAGCTGGTGCTA
AATGCCACTAGAGCAGTTTCTCCAGGAATGTATTTCTTACAAAAGCACTA
TCTTGCTCCCTAATACAAATGTTTGCCTTTTCTAAACGCCTAATTTGCTG
CAGTGATGGAGAAGCCCCTGGTCAATTTCTCAACCCTGGATTTAACTGAT
TTGCAATGCCTCTTTTTCTTTACAATTCCATAGAACAGTTTCCTTTTGAA
CTGTTCAGATTAAAAACTTACTTCAATTAAGTTTTCTCTTCTCATGGCTA
TTTATTTGATATTCATTTTGTTGCTTCTTCTTCTCTCTTTAGTTTTGATG
ATTAAATGATAATTCTCACATACCGA

TGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGAAATTCAGAATTGTGCGGGCTGCAGCTCGTTTGCTGAAAGAAG
GATTAATGTGCAGTTCCTTCCCAGAGTCTAGATTACTGGGGTGTACAAAG
CTTTCATCTCTGACTTAATGCAGATCATCTGATGAATTTGAAATGAGCTC
CCTTGGGGAGATATCATCAAATAATACTGATGACCAGAGGCATTAACTGG
GCAATGCTTTTCTGAATGGCAATAGTCGTCTTCCTTCTTTCCTCCTTCAC
AAGTATGTGTTTTTTTGTATGCAGACAACTTAATTAATCTTTTAGTTCCT
TTTAATATCGATACAATTTATTTATTTTATTTACGAGTGCTTTCCAGTAT
GCCGATATCTATACCCCCTACATGTCTAATACCTGAAGAGCTCAGAAGAG
GACACAGAATTCCCTAGTCCTGGAATTATGGAAGGTTGTGAATTACCACA
TGGGAGATGGAAATTGAACTTGGTTTGTCATCAAGAGCAGAGTACTCTGA
ACCATTGAATCAGTCCTCCAGCCTTTCTTTCTTTCTTTCTTTCTCTCTCT
CTCTCTCGTTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTTTTTTTTT
TCTCTCTTTTTCCCCTTATTTCTTCCTTTTCTATTTCGGCTGAAAATCTT
TTTTTCCTCTTTTTTTTTTTTCTCCCN

Query= MSMg01no413_d09.b1 MSMg01no413_d09.b1 CHROMAT_FILE:
MSMg01no413_d09.b1 PHD_FILE: MSMg01no413_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:49 2005
         (542 letters)



>mm_chr4_29261526_29262467
          Length = 942

 Score =  986 bits (510), Expect = 0.0
 Identities = 534/542 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagggggcagcatcttcattgtttacagtttttgatcgctatgggtaatgtctccctt 60
           |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 201 taaaggggacagcatcttcattgtttacagtttttgatcgctgtgggtaatgtctcccgt 260

                                                                       
Query: 61  ggactgagaaatgtgttagagtttgtgcctcatctattggaaagttaactgtatcatatc 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ggactgagaaatgtgttagagtttgtgtctcatctattggaaagttaactgtatcatatc 320

                                                                       
Query: 121 ttaggacaaatagccagatagatgagaaagctggttgcaattcttcccacagactttaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaggacaaatagccagatagatgagaaagctggttgcaattcttcccacagactttaga 380

                                                                       
Query: 181 tgacagtacttgctcccagttagaggtgaaccctttatcattagccacagctatatagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacagtacttgctcccagttagaggtgaaccctttatcattagccacagctatatagaa 440

                                                                       
Query: 241 aagtcagtgtcttatttattagaaatgtagaaatgattcctagatgctccatggagacag 300
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtcagtgtcttaaatattagaaatgtagaaatgattcctagatgctccatggagacag 500

                                                                       
Query: 301 gctagggtggtataattatcactgctaagagctggtgctaaatgccactagagcagtttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctagggtggtataattatcactgctaagagctggtgctaaatgccactagagcagtttc 560

                                                                       
Query: 361 tccaggaatgtatttcttacaaaagcactatcttgctccctaatacaaatgtttgccttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccaggaatgtatttcttacaaaagcactatcttgctccctaatacaaatgtttgccttt 620

                                                                       
Query: 421 tctaaacgcctaatttgctgcagtgatggagaagcccctggtcaatttctcaaccctgga 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 tctaaacgcctaatttgctgcagtgatggagaagcccctggccaatttctcaaccctgga 680

                                                                       
Query: 481 tttaactgatttgcaatgcctctttttctttacaattccatagaacagtttccttttgaa 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 tttaactgatttgcaatgcctctttttctttaaaattccatagaacagtttccttttgaa 740

             
Query: 541 ct 542
           ||
Sbjct: 741 ct 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no413_d09.g1 MSMg01no413_d09.g1 CHROMAT_FILE:
MSMg01no413_d09.g1 PHD_FILE: MSMg01no413_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:49 2005
         (247 letters)



>mm_chr4_29416959_29417605
          Length = 647

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtatgcagacaacttaattaatcttttagttccttttaatatcgatacaatttatttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtatgcagacaacttaattaatcttttagttccttttaatatcgatacaatttatttatt 267

                                                                       
Query: 61  ttatttacgagtgctttccagtatgccgatatctataccccctacatgtctaatacctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttatttacgagtgctttccagtatgccgatatctataccccctacatgtctaatacctga 207

                                                                       
Query: 121 agagctcagaagaggacacagaattccctagtcctggaattatggaaggttgtgaattac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agagctcagaagaggacacagaattccctagtcctggaattatggaaggttgtgaattac 147

                                                                       
Query: 181 cacatgggagatggaaattgaacttggtttgtcatcaagagcagagtactctgaaccatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 cacatgggagatggaaattgaacttggtttgtcatcaagagcagagtactctgaaccatt 87

                  
Query: 241 gaatcag 247
           |||||||
Sbjct: 86  gaatcag 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)