Query= MSMg01no413_f03.b1 MSMg01no413_f03.b1 CHROMAT_FILE:
MSMg01no413_f03.b1 PHD_FILE: MSMg01no413_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:58 2005
(630 letters)
>mm_chr4_74929060_74930089
Length = 1030
Score = 1168 bits (604), Expect = 0.0
Identities = 622/628 (99%), Gaps = 1/628 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctgtcacttttgaacatttgaagacttctcccttgtatgctcttgactttctg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctgtcacttttgaacatttgaagacttctcccttgtatgctcttgactttctg 263
Query: 64 tgggctatgtttatactttgagaattctgatgaaattttgctgatagtattagatttgta 123
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgggctacgtttatactttgagaattctgatgaaattttgctgatagtattagatttgta 323
Query: 124 ttagatttatacattaatctattaagaactgacatatttatcaaagcgataaaatgatag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttagatttatacattaatctattaagaactgacatatttatcaaagcgataaaatgatag 383
Query: 184 cactgaaagacatcaagtatactttatttttgtatagttccatagcattttgtagtcttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cactgaaagacatcaagtatactttatttttgtatagttccatagcattttgtagtcttt 443
Query: 244 tattgatacttatttcagacattttaaaagaattatgatttttaaatagtcttgtaaatg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tattgatacttatttcagacattttaaaagaattatgatttttaaatagtcttgtaaatg 503
Query: 304 aggcttcttttttcccctaagatttttttccagtttttaaaatctaattggagcattaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggcttcttttttcccctaagatttttttccagtttttaaaatctaattggagcattaaa 563
Query: 364 catgatagaagaagaaaaaaaatcttgtataaaatctcctatgaaaggaaactgtgaaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 catgatagaagaagaaaaaaaatcttgtataaaatctcctatgaaaggaaactgtgaaaa 623
Query: 424 gttcctgattagacagaaaccattccatctccaagtgagaatactcagcataactgtggt 483
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 624 gttcctgattagacagaaaccattccatctccaagtgagaatactcagcgtaactgtggt 683
Query: 484 ctcataaaatgaattggataggattccttttgtgtctattttgtggaaaagtttgaagag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctcataaaatgaattggataggattccttttgtgtctattttgtggaaaagtttgaagag 743
Query: 544 tattggtattaggtcttcttttaaggtctgatagaattctgcactaaaactatctggtct 603
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 744 tattggtattaggtcttctttgaaagtctgatagaattctgcactaaaactatctggtct 803
Query: 604 gggttttttttttggggggg-tagactt 630
|||||||||||| ||||||| |||||||
Sbjct: 804 gggtttttttttgggggggggtagactt 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_f03.g1 MSMg01no413_f03.g1 CHROMAT_FILE:
MSMg01no413_f03.g1 PHD_FILE: MSMg01no413_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:58 2005
(489 letters)
>mm_chr4_75073751_75074638
Length = 888
Score = 907 bits (469), Expect = 0.0
Identities = 484/489 (98%), Gaps = 1/489 (0%)
Strand = Plus / Minus
Query: 1 tctggactaatctcttactttcacaagtgtaactacagatgtgcttggaaacaggcaagt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 562 tctggactaatctcttactttcacaagtgtaactacagatgtgcttagaaacaggcaagt 503
Query: 61 cttggagatctcagagtaatacacgtgaggaacaagctttaagatgaagaaaaaaaaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 502 cttggagatctcagagtaatacacgtgaggaacaagctttaagatgaag-aaaaaaaagc 444
Query: 121 atcatttaaaagaaacaatgtgtgtgcacttttcctgccatttaaacaatgaacgctctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atcatttaaaagaaacaatgtgtgtgcacttttcctgccatttaaacaatgaacgctctt 384
Query: 181 aatatcagcttcttaaacattcactttagatctaaatgttaatattaagatcaaaacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aatatcagcttcttaaacattcactttagatctaaatgttaatattaagatcaaaacaga 324
Query: 241 atgagaggattaataagtacttctcaaatatagcaaatttgaaatgagcatctcagacac 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 323 atgagaggattaataagtacttctcaaatgtagcaaatttgaaatgagcatctcagacac 264
Query: 301 cacgttttggctgatttaaagaccttacttggtaatttaaattagaatcttggacttttg 360
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 263 catgttttggctgatttaaagacctcacttggtaatttaaattagaatcttggacttttg 204
Query: 361 tagttaggatcatctatcccaaatctctcaggtcatgaaaataaggaaaccaaaaaagtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tagttaggatcatctatcccaaatctctcaggtcatgaaaataaggaaaccaaaaaagtc 144
Query: 421 caattatttcccaggtcattcaactaccacatggcagaactgggatataatatatcttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 caattatttcccaggtcattcaactaccacatggcagaactgggatataatatatcttta 84
Query: 481 tgccaccaa 489
|||||||||
Sbjct: 83 tgccaccaa 75
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 888
Length adjustment: 10
Effective length of query: 479
Effective length of database: 878
Effective search space: 420562
Effective search space used: 420562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
