BAC Information

Click to search

BAC

Clone NameMSMg01-413G13
Chromosome4 (Build37)
Map Location 121,400,382 - 121,400,701
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921, LOC666927
Downstream geneLOC666931, LOC666937, LOC633269, LOC633279, 9530002B09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413G13.T7 (MSMg01no413_g13.b1)MSMg01-413G13.TJ (MSMg01no413_g13.g1)
ACCAG509950AG509951
length728738
length of high quality
(start - end)
318 (318 - 635)467 (66 - 532)
definitionCHROMAT_FILE: MSMg01no413_g13.b1 PHD_FILE: MSMg01no413_g13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:05 2005CHROMAT_FILE: MSMg01no413_g13.g1 PHD_FILE: MSMg01no413_g13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCCACT
CTATTTCACAACATCCTACTTAACAGATTTATTTATATATTTCAAGGTCT
TTCAGGAAAAAAACAATGAGCAGGTAACTGAAACAATGAATTTAGAACAG
AGAAAGAATCTGACCACAGAGCATACCATGTATTAAAGAGAAGAAACCTG
GGAGATAAGAGTCTCTGGCTATAAACCAGATTGCAGCTTGTATAGGAAGT
AGCCATGTGTCCACATCTCTCTGCTATACCCAAGACATGTCTGTCCATGA
CACTCTGGAATTCTTGACTGGATCTTTCATAGGATACCTTGTTCCTCTTA
CTAGTTTAAGCTTTCCCCTTTGTAATTTCGTCTTTATTCATGCCACACAC
TCTGGTCGAGTCAGCTTGACAGGCCAAGAGGCCTGGAAGCCACTCACGTG
GCAGAGAGTTTCATGGAAACTCATTTCCTGGAGTCTGGCATTCTCTTTAA
CCCATATACTCATATTCTATTCCTGCGTTAGTCTGGTGCATGGATCCACA
TGCTCTCTTTTAGTATTATCTTATTTTAAGTGCCTTTTAAGATTGACTTC
CGACATAGCTAAGTCTTCACCAGTGTTCCAACGTCCCTAAAAGTTCTTGA
GCATACCATGGGTCTTGTAATTCATTAAAAATGCGGCCTATTCAGTGACA
TTCCGAATTGCCTCTGGATTCGACTACT
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTGAAGATGAAGGGACAGTGGTTTTAAAATGAGA
GTTAGACCTGGAAAAACACCCTGCATTCTCTATAAGAGCATCTAAAGAAA
AGAATTCAATCTTACCAAGCCATAGCATTTTTTCTTCCCACATTCTGGAG
GCAGAGACAGAGAGTGTGGGTAGTCTCTATAATTCAAGGCCATCTTGTTC
TACATATTGAGTTCCAGTCCATTCTGGGCTAGATAGAGAGACAGTGTCTC
AAAATAAATAAATTTTTTCTATATAAACAGGTTCACAGTTTAAAGAAAAG
ACTGCTCTTCTCAGTACCCATATGGTCACTCACAAATATCCATAACTGGA
ATTCCAGGGGACCAAATACCCCACTTTGCCTTATGTTAGTACTGCATGCA
CATGGCTCATATATATATGTGCATGCATACATATATATATGCAATTATAA
GATAACCCAGCAAATCCACTCCTATATTTACACCCAAGAAAATGAAAATA
CACATCTAGATAAAAGCTTCCACAAATGGTTACAGTAGTGTTGATGGAAA
TAACAAAATGTTTAAAAACCAAGCAAATGGCCATTACTGGATAAATAGCC
TGTGGAATCTTCCGACAAGGAACAATATAACCCCCCAAAAAAAGACTGCG
GTGGAAAAAATTCTATAGCCTGGAGGAAATCCAAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_g13.g1 MSMg01no413_g13.g1 CHROMAT_FILE:
MSMg01no413_g13.g1 PHD_FILE: MSMg01no413_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:05 2005
         (467 letters)



>mm_chr4_121400382_121401248
          Length = 867

 Score =  578 bits (299), Expect = e-169
 Identities = 315/325 (96%), Gaps = 9/325 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaagatgaagggacagtggttttaaaatgagagttagacctggaaaaacaccctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctgaagatgaagggacagtggttttaaaatgagagttagacctggaaaaacaccctgca 261

                                                                       
Query: 61  ttctctataagagcatctaaagaaaagaattcaatcttaccaagccatagcattttttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttctctataagagcatctaaagaaaagaattcaatcttaccaagccatagcattttttct 201

                                                                       
Query: 121 tcccacattctggaggcagagacagagagtgtgggtagtctctataattcaaggccatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tcccacattctggaggcagagacagagagtgtgggtagtctctataattcaaggccatct 141

                                                                       
Query: 181 tgttctacatattgagttccagtccattctgggctagatagagagacagtgtctcaaaat 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tgttctacatatcgagttccagtccattctgggctagatagagagacagtgtctcaaaat 81

                                                                       
Query: 241 aaataaatttttt----ctatataaacaggttcacagtttaaagaaaagactgctcttct 296
           |||||||     |    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  aaataaa-----tagggctatataaacaggttcacagtttaaagaaaagactgctcttct 26

                                    
Query: 297 cagtacccatatggtcactcacaaa 321
           |||||||||||||||||||||||||
Sbjct: 25  cagtacccatatggtcactcacaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)