BAC Information

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BAC

Clone NameMSMg01-413M07
Chromosome4 (Build37)
Map Location 37,766,933 - 37,767,424
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042132, LOC545600, LOC621458
Downstream geneLOC277771, LOC100039448, LOC665520
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413M07.T7 (MSMg01no413_m07.b1)MSMg01-413M07.TJ (MSMg01no413_m07.g1)
ACCAG510223AG510224
length817763
length of high quality
(start - end)
---492 (67 - 558)
definitionCHROMAT_FILE: MSMg01no413_m07.b1 PHD_FILE: MSMg01no413_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:33 2005CHROMAT_FILE: MSMg01no413_m07.g1 PHD_FILE: MSMg01no413_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTACTATATCCAGAGGATCCGCGGAATTCATTAAT
TTTACCCTCATGGGGCCAGCTAACACTGAAATTGAAAGGAACTTTAGAGG
TCAGCTGGTCTAATCTTTGCATTATGTATGATTTAAATACTTACCGCCTA
ATTGTCTGAAAGCTTGTATGCTGCGCATGACTCTCCCTACCCTTCCTTCT
GAAATCTGAGACGTAGCCATATTCTAATCTTACAACAACAATCCCCACAC
CCTGACCAGTAAGCCTGACCGCACATGTGCCCTTATCCTGCACTACTTAC
TTAGACTTCCTTTTTTTTTTGCCCACTTTTCACGCCATCATCTACCTCAC
CTCCTCTTTTTCCCTCCCTCCCCCCGCCCCCCCCGTGTGTTTTTCTCCCC
CCCCCCCTTCCCTCCCTCCCCCCCTTTCCCCCCTTCCCCCCTATACCCCC
CCCCCCTCCCCCCCCTTCTCCCTCTCCCCTTCCCCCCCCCCCCTCCCCTC
CCTCCCACCCCCCCCCTCTCCCCTCCCTCTTCCCCCCCCCCTTCCCCCCC
CCCTACCTCCCCTCTCCCCCTCTCTTTCTCCCCCCTCCCCCATCTCCTCC
CCCCCTCCCCTCCTTTTCCCCTTCCCCCCTCCTCCCCCCCACCCTTTTCC
CCTCCTTCCCCCTCCTCCACCCCCCCCCCCCCCCCCCTCTTTCTCCCCCT
TCCCCTCCCCCCCCTCTTTCCCTCCTCCCCTTCCCTTCCCCCCTCCTCCC
CCTTTCCCCTCCCTCACGCACCCTCCTCTCTTTCCCCTCTTCCCCCCCCC
TCTCTCCCTCCCCCCCN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATCCAAGGAGTTGTAATCAAAATAAGGAGAGGAC
ATGGAAAGTATTAATATTAAATATTAATAGTAGTAAAGATAGAGATATAT
GGAATGTCAAGAAACAAATCTATCAGGTGTAATGACTAAGTTTCAATAAC
AGACTGGTTTGAAGAGAAATTTGGTGACAGTGAAGGGTAACAATTTGTAA
TCCTGCCAATTGTAGATATTTTATCTACAGAAAACACAGTCAGTCTAGAA
AGAAGGAAGAGAGAGCTACTAATTTCCAATTCAATAAGACAACATCAAGA
CCAGGGTACCTTTCTTTATAGGCCAAGTCATGTAAAGAGGATTGATCATT
TACTGTTTCTTGTGGTGTGTAATAATGTCTTATGTTGAAAATGCAACAAA
CTGGCATAGTAGCATTTTTATTTTTTATTTTAAATCTACAATCACCATAG
TACCTGCTAAGACATGGTTTAATGATTTTTAGGAAACATAAAAATGGTAT
CTACTTATAATGCATATTTTTTGTTGTCCATTTGACTTCATCTGGATTAA
GAAAAACCCCCCAAGCTGGAAATATTCATGAGAGATAATTCTTAAGAAAA
ACTTTTGTTTTAGGAACCCCTACCCTAAAACTGGGAACTTTTGGAAGGTA
AATGAATAAATTTTATAACCGGAACAACTGTTTTTGGTGGGTTTCCGGAC
ATTTTATTAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_m07.g1 MSMg01no413_m07.g1 CHROMAT_FILE:
MSMg01no413_m07.g1 PHD_FILE: MSMg01no413_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:33 2005
         (492 letters)



>mm_chr4_37766765_37767656
          Length = 892

 Score =  944 bits (488), Expect = 0.0
 Identities = 491/492 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atccaaggagttgtaatcaaaataaggagaggacatggaaagtattaatattaaatatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 atccaaggagttgtaatcaaaataaggagaggacatggaaagtattaatattaaatatta 601

                                                                       
Query: 61  atagtagtaaagatagagatatatggaatgtcaagaaacaaatctatcaggtgtaatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atagtagtaaagatagagatatatggaatgtcaagaaacaaatctatcaggtgtaatgac 541

                                                                       
Query: 121 taagtttcaataacagactggtttgaagagaaatttggtgacagtgaagggtaacaattt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 540 taagtttcaataacagactggtttgaagagaaacttggtgacagtgaagggtaacaattt 481

                                                                       
Query: 181 gtaatcctgccaattgtagatattttatctacagaaaacacagtcagtctagaaagaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gtaatcctgccaattgtagatattttatctacagaaaacacagtcagtctagaaagaagg 421

                                                                       
Query: 241 aagagagagctactaatttccaattcaataagacaacatcaagaccagggtacctttctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aagagagagctactaatttccaattcaataagacaacatcaagaccagggtacctttctt 361

                                                                       
Query: 301 tataggccaagtcatgtaaagaggattgatcatttactgtttcttgtggtgtgtaataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tataggccaagtcatgtaaagaggattgatcatttactgtttcttgtggtgtgtaataat 301

                                                                       
Query: 361 gtcttatgttgaaaatgcaacaaactggcatagtagcatttttattttttattttaaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gtcttatgttgaaaatgcaacaaactggcatagtagcatttttattttttattttaaatc 241

                                                                       
Query: 421 tacaatcaccatagtacctgctaagacatggtttaatgatttttaggaaacataaaaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tacaatcaccatagtacctgctaagacatggtttaatgatttttaggaaacataaaaatg 181

                       
Query: 481 gtatctacttat 492
           ||||||||||||
Sbjct: 180 gtatctacttat 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)