BAC Information

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BAC

Clone NameMSMg01-413N21
Chromosome4 (Build37)
Map Location 36,515,298 - 36,705,429
singlet/doubletdoublet
Overlap genenone
Upstream geneLingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413N21.T7 (MSMg01no413_n21.b1)MSMg01-413N21.TJ (MSMg01no413_n21.g1)
ACCAG510299AG510300
length762762
length of high quality
(start - end)		597 (29 - 625)491 (61 - 551)
definitionCHROMAT_FILE: MSMg01no413_n21.b1 PHD_FILE: MSMg01no413_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:41 2005CHROMAT_FILE: MSMg01no413_n21.g1 PHD_FILE: MSMg01no413_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,704,839 - 36,705,429)(36,515,298 - 36,515,788)
sequence
GCCGCTATACGACTCCTATATTTCGAGGATCCGCGGAATTCCACATCCAT
CTGCATCTTCGAATCTGTTATATTGCTGAGTACATTTAAGAGATTCTTAT
AATTATTGGTAATTTAGGTATAGTTACATGCACAAATCTTAAACACCATC
TTGCCAGGTAACACTCTAGCATGAGTGGGAGAGAGGCCAACAAGCCACTT
TTCATTGGATCTGTGGTCATTGGCAGGTTGACCACGCTGTAGTTCATAGC
CCCTCACCCATGTATACATAGGCAACACTAGTTGAAATCAGAGGGTCATA
ATAAATATAACATAAAAGGACACACATTTGGAAGGGATGCATATTTATGG
TACCTTAAGTGAGTTTAAGGTGAGACTGTGGGTGGAAATGCTCAAGATAT
ATTATATATTAAATACATGAATGAATTATCAAATAGTAAAAAAAAATGTT
TTTTTTAACAACAAGAGACTTTACTTTCCTAAATTACTTAGAGGAAAATG
AATCAGTTTTCCAAAATGAAACATTTGAGGAAATCTATTACTGAGCAAAA
TAGAACAGAAAGGCAATAGACTGTGTAATTAAAATTTTAATTTGTCAAAA
AAAAAAAGTGTCTAAAGCTTTAATAGTAGCCATTAACAGGAACAGTGGTG
TTTTAGTATGCTTTATTAACAAAATGGCAGCATAATTTTCATTGGCTACA
CACACTTTTGAATTTTGTAGTCTTCTGGTTAACACACTAATTCAGGGACT
TAATTATTTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCATTCTCCTGTATTTATCTATGTAATGCTGGGTCAATAA
GTGCCATGCTTAGATTTTACACAGTTGCCCAATATCTGAATTTAGGTCCT
AAGTCTTGGCGGTTGGCATTGTACTGACTAGGCCATCTCCACGGCCTCAA
TGCCTTTATTGAACATTATTTTCTAAACCGATTGTGCTTTTGATTGAAGC
TCTCTATTAATTTGAGATTTAATTGTCTTTTCTAATCCACATACATCTAT
ACTATCAAACAAAACCACTGGCATAGGGATAATATAAGAGAAAAAGCTAT
GTGATAAAAAACTTCTCCTTAACATCTTCTACCATGCTCAACACTCATAA
AAACAAAAGAAAAAAGAAAACCTTGAAATTTGATCTACCAAAAAGCATTG
ATATGGCTTATTTCACTAGGTCTTTTCTGATCATTTCTAGAATTCTCCTG
AAAGTCTTCACATTTTGATAGCATGTTGACTTGTTACAATGCTGTATCTC
ATAGATGTTCATATCTAGAGGATACCTGAGGGAACAGAATTTCTATCCTG
GTACTAATAACTGGGCAATGGGAAACCTCAATGGGATGAATGTGGTTCCC
TTAAAATCTGTGGGAGGGAGGCAGCTGAATTACTGAGCTGAATCTATATC
CTATTCTCCTTTATAAAAAAAAAAAAGATCACGATTTTTTTCACATCTTT
TTCTTTATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_n21.b1 MSMg01no413_n21.b1 CHROMAT_FILE:
MSMg01no413_n21.b1 PHD_FILE: MSMg01no413_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:41 2005
         (597 letters)



>mm_chr4_36704436_36705432
          Length = 997

 Score = 1104 bits (571), Expect = 0.0
 Identities = 586/591 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattccacatccatctgcatcttcgaatctgttatattgctgagtacatttaagagat 66
           ||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 994 ggaattccacatccatcagtatctttgaatctgttatattgctgagtacatttaagagat 935

                                                                       
Query: 67  tcttataattattggtaatttaggtatagttacatgcacaaatcttaaacaccatcttgc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 tcttataattattggtaatttaggtatagttacatgcacaaatcttaaacaccatcttgc 875

                                                                       
Query: 127 caggtaacactctagcatgagtgggagagaggccaacaagccacttttcattggatctgt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 caggtaacactctagcatgagtgggagagaggccaacaagccacttttcattggatctgt 815

                                                                       
Query: 187 ggtcattggcaggttgaccacgctgtagttcatagcccctcacccatgtatacataggca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 ggtcattggcaggttgaccacgctgtagttcatagcccctcacccatgtatacataggca 755

                                                                       
Query: 247 acactagttgaaatcagagggtcataataaatataacataaaaggacacacatttggaag 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 acactagttgaaatcagagggtcataataaatataacataaaaggacacacatttggaag 695

                                                                       
Query: 307 ggatgcatatttatggtaccttaagtgagtttaaggtgagactgtgggtggaaatgctca 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ggatgcatatttatggtaccttaagtgagtttaaggtgagactgtgggtggaaatgctca 635

                                                                       
Query: 367 agatatattatatattaaatacatgaatgaattatcaaatagtaaaaaaaaatgtttttt 426
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 634 agatatattatatattaaatacatgaataaattatcaaatagtaaaaaaaaatgtttttt 575

                                                                       
Query: 427 ttaacaacaagagactttactttcctaaattacttagaggaaaatgaatcagttttccaa 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttaacaacaagagactttactttcctaaattacttagaggaaaatgaatcagttttccaa 515

                                                                       
Query: 487 aatgaaacatttgaggaaatctattactgagcaaaatagaacagaaaggcaatagactgt 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aatgaaacatttgaggaaatctattactgagcaaaatagaacagaaaggcaatagactgt 455

                                                              
Query: 547 gtaattaaaattttaatttgtcaaaaaaaaaaagtgtctaaagctttaata 597
           |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 454 gtaattaaaattttaatttgtcaaaaaaaaaaggtgtctaaagctttaata 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no413_n21.g1 MSMg01no413_n21.g1 CHROMAT_FILE:
MSMg01no413_n21.g1 PHD_FILE: MSMg01no413_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:41 2005
         (491 letters)



>mm_chr4_36515098_36515988
          Length = 891

 Score =  888 bits (459), Expect = 0.0
 Identities = 483/491 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattctcctgtatttatctatgtaatgctgggtcaataagtgccatgcttagattttac 60
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattctcctgtatttgtctacgtaatgctgggtcaataagtgccatgcttagattttac 260

                                                                       
Query: 61  acagttgcccaatatctgaatttaggtcctaagtcttggcggttggcattgtactgacta 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 acagttgcccaatatctgaatttaggtcctaaggcttggcggttggcattgtactgacta 320

                                                                       
Query: 121 ggccatctccacggcctcaatgcctttattgaacattattttctaaaccgattgtgcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ggccatctccacggcctcaatgcctttattgaacattattttctaaaccgattatgcttt 380

                                                                       
Query: 181 tgattgaagctctctattaatttgagatttaattgtcttttctaatccacatacatctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgattgaagctctctattaatttgagatttaattgtcttttctaatccacatacatctat 440

                                                                       
Query: 241 actatcaaacaaaaccactggcatagggataatataagagaaaaagctatgtgataaaaa 300
           ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 actatcacacaaaaccactggcatatggataatataagagaaaaagctatgtgataaaaa 500

                                                                       
Query: 301 acttctccttaacatcttctaccatgctcaacactcataaaaacaaaagaaaaaagaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttctccttaacatcttctaccatgctcaacactcataaaaacaaaagaaaaaagaaaa 560

                                                                       
Query: 361 ccttgaaatttgatctaccaaaaagcattgatatggcttatttcactaggtcttttctga 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 561 ccttgaaatttgatctaccaaaaagcattgacatggcttatttcactagatcttttctga 620

                                                                       
Query: 421 tcatttctagaattctcctgaaagtcttcacattttgatagcatgttgacttgttacaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatttctagaattctcctgaaagtcttcacattttgatagcatgttgacttgttacaat 680

                      
Query: 481 gctgtatctca 491
           |||||||||||
Sbjct: 681 gctgtatctca 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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