BAC Information

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BAC

Clone NameMSMg01-414I19
Chromosome4 (Build37)
Map Location 107,066,783 - 107,277,304
singlet/doubletdoublet
Overlap geneTmem48, Glis1
Upstream geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920
Downstream geneDmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414I19.T7 (MSMg01no414_i19.b1)MSMg01-414I19.TJ (MSMg01no414_i19.g1)
ACCAG510820AG510821
length748781
length of high quality
(start - end)		464 (77 - 540)250 (77 - 326)
definitionCHROMAT_FILE: MSMg01no414_i19.b1 PHD_FILE: MSMg01no414_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:37 2005CHROMAT_FILE: MSMg01no414_i19.g1 PHD_FILE: MSMg01no414_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,276,841 - 107,277,304)(107,066,783 - 107,067,032)
sequence
NNTTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATTCACTCTCCCATGCCCCCAGCCCCTACCCTAGCCA
ACTGTTCAAGGTTAGATGTCCAAAATACACTGTGAAAAGCAAGCTCAGCA
TGGCTCTCTTTAGAGCATTTATCACATGACAGAGAAAGGCCTGGAAACCC
CTCCAAAATGATCACAGTGGTCAAGTGTGAGTGGTGTCCTTAGGGGTGAC
GTGTGAGTGGTATCCTTAGGGGTGACCTTTCCCTCGCCATGCTCTGCTTT
CTTCAAACTTTCTTCTCACTGTCTCCCATTTCATACTACGCTCTGCTGTA
AAAAGCTAGTGGTCAGTGAAGCCCTTTATGGATTGTTTGAAGTTGCAATT
CTAGACCTGTCTCTTAGTTCAGCACGTAACCCTGGGTTACAGGACGTGCC
TATTCTCCTTGTGTCGGTAGGAAGGTCTGAGTCATGTCTGGATGGGACAC
TCACTCCTATGTGACAGGGGCACGGGGTCTTCCACTAAAGTTTTTCATAA
AAACACGAGGACAGCGTGGTGACTTCCAGGAGGAGCTGAAGCTTACGGAA
ACGATGTGCAAACGGCTTTGTGACGGAGCTCCTGGTGCTGGAAACCGCAG
GCCTATACTGTTTAACCGTAAGAAACTCTCTGGAAGAACTGAAAGAAATG
AAGGCCATGGCATGCCCGGCCTCCCAAGGAAGAATTCCACTGTTTATC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAAGTTTACTGCAGCTCTTTG
TTTCCACAGGGGAAAAAGGCTTACTGTGAGTGCCTTATGTATGCCACGCA
CTTTCCCTTAAATTCCCTCCCATAACTCTAACACTGGTCCTCTTTGCTCC
TCATTTTATGGGGAAGAAGAAAGTTTCTGCTCCTAGCATAAAAACCTTTC
CCTCTGTGAGTAAAAGCAAAAATCTACTTTGATTCTTATTCTGCAAGAGC
TGTTGTGTGGTGTTAGGTGCAGACAGTGTTTATAAGCACTGTAGTAGCCC
GCCCAGTCTTCGGCAGATACTTACAAAAACCAGGGTTCTTGGTTTTAGTT
TGGGTTTTGAGATGGTCTCAATAAGTTGCAGTTGGTCTTGAATTCATTCT
CGTAGCCCATGTAGGCCTTGAACTTCAGATCTTCCAGCCTTTGCTTCCTT
AGTAACTGGGATTACAAGCCTGTGCAGCCCAGTTCTGCCAGCATTTATTT
AGATGGGCCAGTTGTTGCTTCATAATGTCTAACCCAGGGCAGATTAAAGA
AAGCCACACTGGGTTTCTTTTTATTGGGCTGAACGAATTAAACAGTTATG
AGACCCAAACCCTAATTTAGTTCGTTTTCTCTCCTTGAAGTGAAACACTA
TGCTGGTTTACCTGAAACTGTGAATATTTTCTCTTTCACATAGCGCAATT
TGGACTGTTTCCTTGTAACATACAAATATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_i19.b1 MSMg01no414_i19.b1 CHROMAT_FILE:
MSMg01no414_i19.b1 PHD_FILE: MSMg01no414_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:37 2005
         (464 letters)



>mm_chr4_107276641_107277504
          Length = 864

 Score =  890 bits (460), Expect = 0.0
 Identities = 463/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcccccagcccctaccctagccaactgttcaaggttagatgtccaaaatacactgtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tgcccccagcccctaccctagccaactgttcaaggttagatgtccaaaatacactgtgaa 605

                                                                       
Query: 61  aagcaagctcagcatggctctctttagagcatttatcacatgacagagaaaggcctggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aagcaagctcagcatggctctctttagagcatttatcacatgacagagaaaggcctggaa 545

                                                                       
Query: 121 acccctccaaaatgatcacagtggtcaagtgtgagtggtgtccttaggggtgacgtgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 acccctccaaaatgatcacagtggtcaagtgtgagtggtgtccttaggggtgacgtgtga 485

                                                                       
Query: 181 gtggtatccttaggggtgacctttccctcgccatgctctgctttcttcaaactttcttct 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 484 gtggtatccttaggggtgacctttccctcgccatgctctactttcttcaaactttcttct 425

                                                                       
Query: 241 cactgtctcccatttcatactacgctctgctgtaaaaagctagtggtcagtgaagccctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cactgtctcccatttcatactacgctctgctgtaaaaagctagtggtcagtgaagccctt 365

                                                                       
Query: 301 tatggattgtttgaagttgcaattctagacctgtctcttagttcagcacgtaaccctggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tatggattgtttgaagttgcaattctagacctgtctcttagttcagcacgtaaccctggg 305

                                                                       
Query: 361 ttacaggacgtgcctattctccttgtgtcggtaggaaggtctgagtcatgtctggatggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttacaggacgtgcctattctccttgtgtcggtaggaaggtctgagtcatgtctggatggg 245

                                                       
Query: 421 acactcactcctatgtgacaggggcacggggtcttccactaaag 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 acactcactcctatgtgacaggggcacggggtcttccactaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no414_i19.g1 MSMg01no414_i19.g1 CHROMAT_FILE:
MSMg01no414_i19.g1 PHD_FILE: MSMg01no414_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:38 2005
         (250 letters)



>mm_chr4_107066583_107067232
          Length = 650

 Score =  484 bits (250), Expect = e-141
 Identities = 250/250 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgaagtttactgcagctctttgtttccacaggggaaaaaggcttactgtgagtgcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaagtttactgcagctctttgtttccacaggggaaaaaggcttactgtgagtgcctt 260

                                                                       
Query: 61  atgtatgccacgcactttcccttaaattccctcccataactctaacactggtcctctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtatgccacgcactttcccttaaattccctcccataactctaacactggtcctctttg 320

                                                                       
Query: 121 ctcctcattttatggggaagaagaaagtttctgctcctagcataaaaacctttccctctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcctcattttatggggaagaagaaagtttctgctcctagcataaaaacctttccctctg 380

                                                                       
Query: 181 tgagtaaaagcaaaaatctactttgattcttattctgcaagagctgttgtgtggtgttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtaaaagcaaaaatctactttgattcttattctgcaagagctgttgtgtggtgttag 440

                     
Query: 241 gtgcagacag 250
           ||||||||||
Sbjct: 441 gtgcagacag 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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