BAC Information

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BAC

Clone NameMSMg01-414O17
Chromosome4 (Build37)
Map Location 107,250,835 - 107,251,365
singlet/doubletsinglet
Overlap geneGlis1
Upstream geneDhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48
Downstream geneDmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414O17.T7 (MSMg01no414_o17.b1)MSMg01-414O17.TJ (MSMg01no414_o17.g1)
ACCAG511101AG511102
length756770
length of high quality
(start - end)		590 (48 - 637)531 (77 - 607)
definitionCHROMAT_FILE: MSMg01no414_o17.b1 PHD_FILE: MSMg01no414_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:07 2005CHROMAT_FILE: MSMg01no414_o17.g1 PHD_FILE: MSMg01no414_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGATCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATCTT
GTCAAATGCTTTTTCTGCATCTAACCAGATGATCATGTGGTTTTTGTCTT
TGAGTTTGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAAAC
CATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGC
TTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTG
CATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGA
TCTTTCTATGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTT
GGGTAGAGTACTTTCTACTTCTATTTTGTGAAAAAGTTTGTGCAGAACTG
GAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCT
GGTCCTGGGCTTTTTTTGGCTGGGAGACTATTTATAACTGCTTCTATTTC
TTTAGGTGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAACT
TTGGTACCTGGTATCTGTCCAGAAATTTGTACATTTCGTCCAGNTTTTCC
AGTTTTGTTGAGTATAGCCTTTTGTAGAAAGATCTGATGGTGTTTGGGAT
TTCTTCAGGATCTGTTGTTTTGTCTCCCTTTTCAGTTCCGATTTTGTTAT
TACAAG

NCCGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAAATCTCAAAATGCTAGAGT
CCAGGTCTTCCACTTTACAAATGAGGGAAAATGAGGCTCCAAAGGGGTAG
AGTTGCTAGCTCCAGCCACATAAGTTTGCCTGCGAAAGTGGGGAGAGAAC
GTGCCCCGTGCCCCTGCTCTGTGCTATTCGAGATGGATGGATGGATGAGT
CAGGAGCAGAATAGCTATAAACTTCATCTAATCAAAGTCCTTGCCCCACA
TAGAGACACTGAGGTCCCAACAGTTAGGTAGCTCCTAGAGCCCACAGCAG
AAGCACAGCTCGCTTGTGTGGGCTTTGCACCCACCTAGCTTCCTCTGGGC
CTGACACCCATGGCCATCAGTCACAACACTGCTCCAGGGTACAGGAGGAG
TGAGGCATGAACCCACTGCTCAACAGGTCTCCCTGGAGGCGGCCAGGCAG
TGCCTTGAGTACCAGATTGCCAAAACAAAGGAGATTCTATTGAACATATG
GTAGCCATTCCTGCCTTGAACTCAGCAGGTTATCTTTACATGTCCTGCAC
CTTCAGATCAGCTACTGGGGCGACGTGGTGGCTGGAAGGAAACCTTAGTG
ACACGCCCAAACCTGGAAACTTCTTTCTCAGGGCATATGACATGGCCCAG
GTGCTTCAAGAATTGAAGTGAGGCATGTGAACCCCTAAAATGGGGCCCAG
CCCCTATTAGGCCCCCCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_o17.g1 MSMg01no414_o17.g1 CHROMAT_FILE:
MSMg01no414_o17.g1 PHD_FILE: MSMg01no414_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:08 2005
         (531 letters)



>mm_chr4_107250539_107251469
          Length = 931

 Score =  980 bits (507), Expect = 0.0
 Identities = 525/531 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaaatctcaaaatgctagagtccaggtcttccactttacaaatgagggaaaatgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 cagaaaatctcaaaatgctagagtccaggtcttccactttacaaatgagggaaaatgagg 768

                                                                       
Query: 61  ctccaaaggggtagagttgctagctccagccacataagtttgcctgcgaaagtggggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ctccaaaggggtagagttgctagctccagccacataagtttgcctgcgaaagtggggaga 708

                                                                       
Query: 121 gaacgtgccccgtgcccctgctctgtgctattcgagatggatggatggatgagtcaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gaacgtgccccgtgcccctgctctgtgctattcgagatggatggatggatgagtcaggag 648

                                                                       
Query: 181 cagaatagctataaacttcatctaatcaaagtccttgccccacatagagacactgaggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cagaatagctataaacttcatctaatcaaagtccttgccccacatagagacactgaggtc 588

                                                                       
Query: 241 ccaacagttaggtagctcctagagcccacagcagaagcacagctcgcttgtgtgggcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ccaacagttaggtagctcctagagcccacagcagaagcacagctcgcttgtgtgggcttt 528

                                                                       
Query: 301 gcacccacctagcttcctctgggcctgacacccatggccatcagtcacaacactgctcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gcacccacctagcttcctctgggcctgacacccatggccatcagtcacaacactgctcca 468

                                                                       
Query: 361 gggtacaggaggagtgaggcatgaacccactgctcaacaggtctccctggaggcggccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 467 gggtacaggaggagtgaggcatgaacccactgctcaacaggtctcccgggaggcagccag 408

                                                                       
Query: 421 gcagtgccttgagtaccagattgccaaaacaaaggagattctattgaacatatggtagcc 480
           || ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 407 gcggtgccttgagtaccagattgccagaacaaaggagattctattgaacatatgttagcc 348

                                                              
Query: 481 attcctgccttgaactcagcaggttatctttacatgtcctgcaccttcaga 531
           |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 347 attcctgccttgaactcagcaggtcatctttacatgtcctgcaccttcaga 297


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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