BAC Information

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BAC

Clone NameMSMg01-415A24
Chromosome4 (Build37)
Map Location 30,345,110 - 30,345,509
singlet/doubletsinglet
Overlap geneLOC665185
Upstream genenone
Downstream geneLOC619906, LOC100040864, LOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415A24.T7 (MSMg01no415_a24.b1)MSMg01-415A24.TJ (MSMg01no415_a24.g1)
ACCAG511210AG511211
length772744
length of high quality
(start - end)		303 (39 - 341)450 (68 - 517)
definitionCHROMAT_FILE: MSMg01no415_a24.b1 PHD_FILE: MSMg01no415_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:19 2005CHROMAT_FILE: MSMg01no415_a24.g1 PHD_FILE: MSMg01no415_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTTATCTCTGAGCCCCATTTTTAATGGGGTTATATGATTTTCTGGAGT
CCACCTTCTTGAGATCTTTATATATATTGGATATTAATCCCGTATCTGAT
TTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTT
ATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCC
ATTTGTTGATTCTCAATCTTACAGCACAAGCCATTGCTGTTCTATTCAGG
AATTTTACCATGACCATATCTTCGAGGATTTTCCCCACTTTTTCCTCTAN
TAGTTTTACTGTCTCTGGTTTTGTGTGNAGTTCCTTTAATCAACTTAGAT
TTGACCTTAGNACAAGGAAGATAGGAATGGATCAATTTGCATTCTTCTAC
CTGAAAACCGCCGGTTGTGAAAGCACCCTTTCCTGGAAAGGGTGGCTTTT
TCTCCCGGGAGGGTTTTAACCCTTTGGCCAAAAAAAAGGGCCCTAGGGGG
GATGTTTTTTTCCCTTGGCCCACAAGGGGCCTCTTTTAATGTGGCCCTGT
CTTAAAAATTTTGCCCCCCCTAAAAGGGCGCCCTCTTTTATTGGTTCAAC
ACACCCCTTCCTTCTGTGTGGGGTCTTTCCCCCCCTTCCCCTTTGGTGGC
CAATAAATTCTCCTTTTTGTTTAAATCCCCCCTTTATCTTTCTCTCCTCC
TTTTCTTTTTTTTTTCCGTCCG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATGATGTGTACTGATAATGCAAATCACCAATA
TGAGAGGAAAAAAGAAGTTAGAGATGTGCACTTTGGCTTTCTAAACTTTA
TAACTGGTACAGGAGAAAAAGAATGTGAAAATAAGCATTTGAAAAGTGAA
ATAGTTTTCTTTCTTGTTATCTACACTCTAGGATGTCTACTAAATGTAGT
TTAAAGTAAATTCAGTCTTATTCTGATTAGTCTTCATGAGTCTCCAACAA
CATAGGTTCAAATGCTTTTCAAGAAATTCACTTTTCTAAGTAAAATATAT
TGTTCATTTCTGTGTAGTTTGCACATATGAAGATATAGTACATAGAATTT
TTCTTATAACACATATCAAATACGGTGACAATTATAATCTCTCGTTATTC
ACTTGGTCTTTTTACCTTATAGGAGCTCTACATGTCATTGGGTGAATGCT
GGTACTTTTCTCATTANAAGCAAATGATCTTATGCCTGCAATATTTATAC
TAGTGAAACACTAATATACATTATGCATATAAAACACTCTTATAAAGATG
CACTGAATATTTAAAATTTTATTTTAATTTACCTGGCATCCTATTTATTT
ACCATTCCAATGTTATCCCCCCTTTCCCGTTTGTTTCCCAAAACACAATA
ATCCCTTTTTCTTCTTCCCCGGGGAATGTAGGCGGCTCCTCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_a24.g1 MSMg01no415_a24.g1 CHROMAT_FILE:
MSMg01no415_a24.g1 PHD_FILE: MSMg01no415_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:20 2005
         (450 letters)



>mm_chr4_30344861_30345710
          Length = 850

 Score =  758 bits (392), Expect = 0.0
 Identities = 398/400 (99%)
 Strand = Plus / Plus

                                                                       
Query: 50  gttagagatgtgcactttggctttctaaactttataactggtacaggagaaaaagaatgt 109
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gttagagatgtgcactttggctttctaaactttataactggtacaggagaaaaagaatgt 309

                                                                       
Query: 110 gaaaataagcatttgaaaagtgaaatagttttctttcttgttatctacactctaggatgt 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gaaaataagcatttgaaaagtgaaatagttttctttcttgttatctacactctaggatgt 369

                                                                       
Query: 170 ctactaaatgtagtttaaagtaaattcagtcttattctgattagtcttcatgagtctcca 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctactaaatgtagtttaaagtaaattcagtcttattctgattagtcttcatgagtctcca 429

                                                                       
Query: 230 acaacataggttcaaatgcttttcaagaaattcacttttctaagtaaaatatattgttca 289
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 430 acaacataggttcaaatgcttttcaagaaattcacttttctaagcaaaatatattgttca 489

                                                                       
Query: 290 tttctgtgtagtttgcacatatgaagatatagtacatagaatttttcttataacacatat 349
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 490 tttctgtgtagtttgcacatatgaagatgtagtacatagaatttttcttataacacatat 549

                                                                       
Query: 350 caaatacggtgacaattataatctctcgttattcacttggtctttttaccttataggagc 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 caaatacggtgacaattataatctctcgttattcacttggtctttttaccttataggagc 609

                                                   
Query: 410 tctacatgtcattgggtgaatgctggtacttttctcatta 449
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tctacatgtcattgggtgaatgctggtacttttctcatta 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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