BAC Information

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BAC

Clone NameMSMg01-416D06
Chromosome4 (Build37)
Map Location 17,733,814 - 17,734,093
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416D06.T7 (MSMg01no416_d06.b1)MSMg01-416D06.TJ (MSMg01no416_d06.g1)
ACCAG512077AG512078
length864671
length of high quality
(start - end)
283 (38 - 320)72 (78 - 149)
definitionCHROMAT_FILE: MSMg01no416_d06.b1 PHD_FILE: MSMg01no416_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:47 2005CHROMAT_FILE: MSMg01no416_d06.g1 PHD_FILE: MSMg01no416_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCCAAT
CAGTCTTTCATTTTAAGACCTGAATTCAAAAATTAAAAACGAAGAGAGAA
GAAAGAAAAAAGGGGAAGGAAGGAAAGGAAGAACGGAGGGAGTCAACAAA
CTACTACTTTTTCTCATATTGGATTTCAGAAAACTCCAGGCCTGTGAGGA
AGAGGAAGGGAAGGTGAGGCCTGTGCTTACAATGAACTATAAACAATCTC
CTTAACATTTGGAATGTTTAAAGAGGTTTTTCTTTTCTAACCACAGACAT
AAGACAAATATAGGAGCATGTTTGAGAAACTGCATTCCTAAGGAATATAC
AGTCCTTAGGTGAATAGTCAGTGCCTTTCCTGCCTGACTTTCCGGATCAT
GGTCTAGGATCCACCACAAAAGCTCCATGAGCATTTTTTCCTGGGTTTTC
TTTATAAGCTTTCTATGAAAGCTCAGTTTTGCTATTGAAANAACCGAGAA
CTGTCTGAAACCCTTCCCACAAATCCACTAAGGCTAAAAATAAAAACCAA
TTTTAAAAATTTAAAATTTTTAGGGTAATTTTCCCAATAAATCCCGGGAA
AGCCGGGGAAACCCCGGGAAAAATTGGAAGGTTTTTTGGTGGGTTGGGCC
CTTTGGCCCCCCTTTGGGGGGGGTTGGGCCTTTTTTTCAAAAAAAAAAAA
AGGGGGGCCCCCCGCCCGGTTTTTGGCCAATACGAAACTCCGGGTGTTTT
AAAAACCACTGTCTCGGGAAACCCGGGAATTTCTTCTGGGGAAAAACCTG
GGGGTTGGAGAACACGGGGACAATCTCTTTTTTTTTGTGGGGGTAAAAAA
ATTCCCCACCTCGC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCACATAATGGTGTTCAGTTTC
AANTTAAGTATATGGTGTCTACATANTTTTAGAGATGGGTTTTTAGTTCA
TTTTAAAGAATACCAATTTCCTAAAAGGAGAACCATAATTTTTAAATTCC
TAGAAACCTAAACCAGGGCACCCCTAATTTAAAATTGGGAGGGAAAATTT
TCCCCCCCCCAGAGGAGAGGGGGGGGTTATCCCCTCCTCTCCTCCCCAAA
ACAAGAAGTGTGTTTTGTGGGGCCGCCCCAAGGGGGGGGGGAAAAAAAAT
GTGGTGGTGGGGGCCCCGCCCCCGTAAGGGGAATTAAAAAAATTACTTTG
GGGGGGGGGGCGCGTCGTCTCACACCTCCCCCAAACTGTCNNCCAAAACA
AGAGGATTCATTTTATCCACCCTTCTCTCTATACCCCGTCGTTTACATTT
TACAGACATTATAGCCGAAAAAAAGCCGGGGTGGTGTGGGGGGGGGGGGT
GGTTTTACACTACAGAACACAACACAAAACCCCTTTTTCTTTTGTGTGTG
GGAGTGCACCCCCCCCACCCCCCCCCACCCCTACCCTCATTTACCAAACA
CACAACAAGAGAGAGGGGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_d06.b1 MSMg01no416_d06.b1 CHROMAT_FILE:
MSMg01no416_d06.b1 PHD_FILE: MSMg01no416_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:47 2005
         (283 letters)



>mm_chr4_17733611_17734293
          Length = 683

 Score =  485 bits (251), Expect = e-142
 Identities = 273/283 (96%), Gaps = 6/283 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattccaatcagtc---tttcattttaagacctgaattcaaaaattaaaaacgaagaga 60
           |||||||||||||||   |   |||||||||||||||||||||||||||||| |||||||
Sbjct: 204 gaattccaatcagtcacct---attttaagacctgaattcaaaaattaaaaaggaagaga 260

                                                                       
Query: 61  gaagaaagaaaaaaggggaaggaaggaaaggaagaacggagggagtcaacaaactactac 120
           ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||
Sbjct: 261 gaagaaagaaaaaaggggagggaaggaaaggaagaatggagggagtcaacaaactattac 320

                                                                       
Query: 121 tttttctcatattggatttcagaaaactccaggcctgtgaggaagaggaagggaaggtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttctcatattggatttcagaaaactccaggcctgtgaggaagaggaagggaaggtga 380

                                                                       
Query: 181 ggcctgtgcttacaatgaactataaacaatctccttaacatttggaatgtttaaagaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcctgtgcttacaatgaactataaacaatctccttaacatttggaatgtttaaagaggt 440

                                                      
Query: 241 ttttcttttctaaccacagacataagacaaatataggagcatg 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttcttttctaaccacagacataagacaaatataggagcatg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)