BAC Information

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BAC

Clone NameMSMg01-416D12
Chromosome4 (Build37)
Map Location 88,480,255 - 88,480,568
singlet/doubletsinglet
Overlap genenone
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6
Downstream geneIfna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416D12.T7 (MSMg01no416_d12.b1)MSMg01-416D12.TJ (MSMg01no416_d12.g1)
ACCAG512089AG512090
length692716
length of high quality
(start - end)
314 (299 - 612)567 (60 - 626)
definitionCHROMAT_FILE: MSMg01no416_d12.b1 PHD_FILE: MSMg01no416_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:48 2005CHROMAT_FILE: MSMg01no416_d12.g1 PHD_FILE: MSMg01no416_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:48 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AGTCGNGAGCGGGGNGGAATTCTGAGTTTTAGCAAAAAAAGGGATACAAA
CTGTGTTCCAGGACAGCCAGGACTATACAGAGAATTTCTGTCTCGATAAA
AGTAAAAAAATAAAAAGTCCTAAAATTGGGTTTCTCGAGTTGCCTTCATT
AAGTGTAATATAAATTTATATACAATTTATTTTAATCCTCAATGTATGTT
AGCTATTTATCTGATGATTTTATTTTCATCAGGAGGATGCAGGGTCCAGA
AACGCTCACTGTCAAACTTGATGAGCTGAGTGTGATTTCNGTAACCCTCG
GATGCAGTAGAGAACCAGTGCATGCACAGGATCCCGCATCACAACATTCA
CAGCACTGCAGGCTGTGCATATGCACCCTCTCTCTCTCTGTCGCTCTCTA
GTGTGTGTGTGTGTGTCTATGTTCTCTCTCTCTTTCACACACACAGAAGC
ACAGAAACACAATCACATATTCATACACTCACTCATTTGTGACACAGGTG
CCTCATATGTGCTATGAACCTCTGTCTAGATTCTTCTTTGACATCATGAA
TTGTTCAAGTCTGAGATTTCTTCTCTGTGGTTACAGCAACTTTTCCATGA
TTTTCTCTTTCATTGCATGGAATGTTTTTCTGATTTTATTTGATATATTT
GTACATGAATTGTAGCTACCTGTGTCTCTGACTATCACTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCACCTGAGGAATACTGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAT
AGCATATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCCCCATTGTTG
GTGGGATTGCAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATT
GGACATATTACTACCAGAGGATCCTGCAATACCTCTCCTGGGTATATATC
CAGAAGATGTCCCAACCAGTAAGAAGGACACATTCTCCACTATGTTCATA
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACT
ACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATG
GACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTC
ACACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTANGAT
ACCCAAGATATAAGATACCATTTATAAACGCACAAAACTCAAGAAGACCG
AAGACCAAAGTGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_d12.b1 MSMg01no416_d12.b1 CHROMAT_FILE:
MSMg01no416_d12.b1 PHD_FILE: MSMg01no416_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:48 2005
         (314 letters)



>mm_chr4_88480055_88480768
          Length = 714

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cggatgcagtagagaaccagtgcatgcacaggatcccgcatcacaacattcacagcactg 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 514 cggatgcagtagagaaccagtgcatgcacaggagcccgcatcacaacattcacagcactg 455

                                                                       
Query: 61  caggctgtgcatatgcaccctctctctctctgtcgctctctagtgtgtgtgtgtgtgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 caggctgtgcatatgcaccctctctctctctgtcgctctctagtgtgtgtgtgtgtgtct 395

                                                                       
Query: 121 atgttctctctctctttcacacacacagaagcacagaaacacaatcacatattcatacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atgttctctctctctttcacacacacagaagcacagaaacacaatcacatattcatacac 335

                                                                       
Query: 181 tcactcatttgtgacacaggtgcctcatatgtgctatgaacctctgtctagattcttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tcactcatttgtgacacaggtgcctcatatgtgctatgaacctctgtctagattcttctt 275

                                                                       
Query: 241 tgacatcatgaattgttcaagtctgagatttcttctctgtggttacagcaacttttccat 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 274 tgacatcatgaattgttcaagtctgagatttcttctctgtgtttacagcaacttttccat 215

                         
Query: 301 gattttctctttca 314
           ||||||||||||||
Sbjct: 214 gattttctctttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)