BAC Information

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BAC

Clone NameMSMg01-416F08
Chromosome4 (Build37)
Map Location 101,697,610 - 101,698,175
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039747, Raver2, Jak1, E130102H24Rik, Ak3l1, LOC669460, Dnajc6, Leprot, Lepr, B020004J07Rik, LOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536
Downstream geneLOC433739, Pde4b, Sgip1, Tctex1d1, Insl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416F08.T7 (MSMg01no416_f08.b1)MSMg01-416F08.TJ (MSMg01no416_f08.g1)
ACCAG512176AG512177
length7171,636
length of high quality
(start - end)		563 (16 - 578)---
definitionCHROMAT_FILE: MSMg01no416_f08.b1 PHD_FILE: MSMg01no416_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:56 2005CHROMAT_FILE: MSMg01no416_f08.g1 PHD_FILE: MSMg01no416_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATTTCGAGAGGATCCGCGGAATTCCTTGGAGTTCGCTGTTGTGAG
CTGTCCATTGTGGGTGCTGGGAACTGAAAGTCTACTCTGTGTGAGCAGTT
TGTGCTCATAAGGTGAGCCTCTCTCAAAATAACTTTAAAAAATACATGTA
TTATTTTTAAACATTAAATAGCTAAAATAACAAGAAAAAATAAAATCTCT
GGTAATTTCCCATTTGGAGATAACCACTGAAAAGATTTCCTTGGCTCTGT
CTTTGATAGATGATAAACAGGTGACTAGATGGATGTGTGCACACAGAATC
GATCATGTACTGGTCATGGTCATTTGCTGTTTTGTAGCTTGCAGTGCTTG
CCTTACTTTCTTAAAAAATCATCTTTATTCACGAGTCCAGAGTTTTCCTT
ATCTCCTATTCAGGGATAGTTTCTGTTTTTGATATAAAGACATGGACTCA
TATTTATCCCAATGTGATTATCTATGAGTATAACTTGCATATAGTGACAA
GGTGGGAGGTAATTTAAACAGAAAGCTATATCTGTACGAGCAAAGGCAGT
TACAACTGGACACAAGTCAGTCTGGCGAACAATAAGTTACCGTTTCTATC
TATTGTAACATTATTTTTAAAACGTAAAGTGTGGGGGGGGGGACTAGAAA
ATGTTCCAGCAGTTAAGAACACTTGTTCCTCCTGCAAAAAAACCAGGTCA
ATTTCCAGGAACCCTAA

TTTTTGGNNNNTTTTTTTTTNNTTCTATTTCTCTATATACTCTTATTCAT
ATTTTTTTCTTTCTCGCTTTAATCTCTATCCGTACTCTTTCTGCCTGACT
CCCTCATCTCCTTCTCTATATTTTGATGAAATACTAATAACAAAGCAGTA
CCACGCCAGACTACCATCGTCTCCTATATCATCGCTAAAAGACTAAGATG
ATAGCATGTATAGAGACACTGAACAATTAAAATCTTCCATATATAGAAAC
GCACAGAAAGTCCACCAATAACATAGAACTCCAGTCTCACTCTCCTACAC
CCGTGCTGCANCACCGCAACCCCTGTGTACGTCATCCTGCTCGTGCTCTG
TTACACATGTAAAGATAGAATATAAGAATAGATAACAGTACATGAACACA
TGCACTGAATAATGTCAAGGCCTACTATATTAGATAGTACATATCAGACC
TAGGCGCAGTGACACTGATCCACTATTACACTACTATTTATGATAGACTG
TTGCAGTAAAATATAGATAGTACTACCATAAGATGAGATAATCACTGTTG
TGGTGCATTTATGTATATATGTTCCTTACGAGTTGTGTGCCTCAGATGAG
AGTTGTAGACGGTGTAATTGTTATGAGTACTGCTATTCTCCGCATCTCGT
CCACATTCTTGGTGACCGTTCTCACTCTACTACATAATCACTTCACTACG
TTCATTTATACATATTGTGCTAATATCGATATATATCTCTGTCTCTGTCA
TCAACCATCACCGCATCACAGTCCACTCTAANATATTCACTTACACGCTT
CGTCTATCTACAAACACAGAGATACTAACTATCGTACACTATACAACGTA
TGTCCTCGACGTCGACGTATTATCTCCACTATACAGTTATCGTACATCTA
NCAACTGATTATCACTTAATGACNGACAAACTACTCTCAGTTATTAATCT
GAATANTACACGTAGTTATCATGTATTCACATCCACTATTATAATGCTGA
CGCGACACACGTCTACTCTCACTATCACTNAGTAGACGCACATCATCGAN
GTATCACGCACTCATGCATTCAATCCTATCACGCACACTCTCATATACAT
AACTTGTCTATTCTATCATCACTAATATATATATACACTTATCTCGTATC
GCGAGTCGAGCTGCTTACAGCACTGTTCTTCATAAAGACTCTACTCCACC
ACATCATTACGCAGCGTNTAAGATTTAACATAGACGAACGTCACCGTACG
CGAGANATACAACAGCCGCCGCACGCACGCCGTCTGCGTAATTCTGACGT
TACTAGTGACAGTCAAGATGTGTGGATGCTGATATGCAGTGCGACTGAGA
NTAACTATCGAACACATCATCGCGACTACTCTATAGAGCAACACTATACT
ATCAGTATTCACTNATCTGTCGTCAATATCACTTACTTACTCACTATCAT
NCTCTTCATCCACGCATCACTACTATCTATGACACACATTTCACAGAACT
AATCGACACATGCTCATGTATNCACANATACTTAGTGAGCATACATACAC
ATATCATATCTGTANCGTTCAATAGTAGCATCTCACGCATAATACTACGC
TATCATACTACTCTCTACNCTANTACACTTCAGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_f08.b1 MSMg01no416_f08.b1 CHROMAT_FILE:
MSMg01no416_f08.b1 PHD_FILE: MSMg01no416_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:56 2005
         (563 letters)



>mm_chr4_101697424_101698387
          Length = 964

 Score =  882 bits (456), Expect = 0.0
 Identities = 533/566 (94%), Gaps = 14/566 (2%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattccttggagttcgctgttgtgagctgtccattgtgg-gtgctgggaactgaaagtc 67
           ||||||||||||| | ||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 752 gaattccttggagctggctgttgtgagctgtccattgtggtttgctgggaactgaaagtc 693

                                                                       
Query: 68  tactctgtgtgagcagtttgtgctcataaggtgagcctctctcaaaataac-tttaaaaa 126
           || |||||  ||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 692 tagtctgtacgagaagtttgtgctcataaggtgagcctctctcaaaataacttttaaaaa 633

                                                                       
Query: 127 atacatgtattatttttaaacattaaatagctaaaataacaagaaaaaataaaatctctg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 atacatgtattatttttaaacattaaatagctaaaataacaagaaaaaataaaatctctg 573

                                                                       
Query: 187 gtaatttcccatttggagataaccactgaaaagatttccttggctctgtctttgatagat 246
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 572 gtaatttcccatttggagataaccactgataagatttccttggctctgtctttgatagat 513

                                                                       
Query: 247 gataaacaggtgactagatggatgtgtgcacacagaatcgatcatgtactggtcatggtc 306
           ||||||||||||||| ||||||||||||||||||||||||||||||| |  | |||||||
Sbjct: 512 gataaacaggtgactcgatggatgtgtgcacacagaatcgatcatgtcccagccatggtc 453

                                                                       
Query: 307 atttgctgttttgtagcttgcagtgcttgccttactttcttaaaaaatcatctttattca 366
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 452 atttgctgttttgtagcttgcagtgcttgccttactttcttaaaaattcatctttattca 393

                                                                       
Query: 367 cgagtccagagttttccttatctcctattcagggatagtttctgtttttgatataaagac 426
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 392 tgagtccagagttttccttatctcctattcagggacagtttctgtttttgatataaagac 333

                                                                       
Query: 427 atggactcatattta------------tcccaatgtgattatctatgagtataacttgca 474
           |||||||||||||||            ||||||| |||||||||||||||||||||||||
Sbjct: 332 atggactcatatttatcccaatatttttcccaatatgattatctatgagtataacttgca 273

                                                                       
Query: 475 tatagtgacaaggtgggaggtaatttaaacagaaagctatatctgtacgagcaaaggcag 534
           ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 272 tatagtgacaaagtgggaggtaatttaaacagaaagctatatctgtacaagcaaaggcag 213

                                     
Query: 535 ttacaactggacacaagtcagtctgg 560
           ||||||||||||||||||||||||||
Sbjct: 212 ttacaactggacacaagtcagtctgg 187


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 964
Length adjustment: 10
Effective length of query: 553
Effective length of database: 954
Effective search space:   527562
Effective search space used:   527562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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