Query= MSMg01no416_i14.b1 MSMg01no416_i14.b1 CHROMAT_FILE:
MSMg01no416_i14.b1 PHD_FILE: MSMg01no416_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:11 2005
(563 letters)
>mm_chr4_40251608_40252580
Length = 973
Score = 1007 bits (521), Expect = 0.0
Identities = 557/573 (97%), Gaps = 10/573 (1%)
Strand = Plus / Plus
Query: 1 gccagcttgtaagagacacacatccaacaataagtatcattagttatgtagttgagagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccagcttgtaagagacacacatccaacaataagtatcattagttatgtagttgagagaa 260
Query: 61 tcttggcaaaatcatcaagtctcacaaacaaggtgcccccgaaaggctgtcagagattcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttggcaaaatcatcaagtctcacaaacaaggtgcccccgaaaggctgtcagagattcc 320
Query: 121 ctctgtggtccaaagagctgcgatttgcctctagttttcttggataatacattccggtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgtggtccaaagagctgcgatttgcctctagttttcttggataatacattccggtgt 380
Query: 181 gccaagcaacagtgttgaatcacagattgtgttaccaggaagatgatggaaccatgaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccaagcaacagtgttgaatcacagattgtgttaccaggaagatgatggaaccatgaact 440
Query: 241 gaaacagggaccagctttaagtgtcctgtgagcctgtaaaatactatgtacttcctggca 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaacagggaccagcaggaagtgtcctgtgagcctgtaaaatactatgtacttcctggca 500
Query: 301 aaccagggggccggtgcctaagggagaaaggtagtataatgaagattccagagacaggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccagggggccggtgcctaagggagaaaggtagtataatgaagattccagagacaggca 560
Query: 361 aaaataaaa----gcaaagttcccaggagaactgacagccatatagtagaacgtgtaggc 416
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaaaaaaaaagcaaagttcccaggagaactgacagccatatagtagaacgtgtaggc 620
Query: 417 aaatagaacagcatctctcgggaagactgaccaaggtgctgtagggaggggactcaaagc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatagaacagcatctctcgggaagactgaccaaggtgctgtagggaggggactcaaagc 680
Query: 477 atctttgctagtatctttggtcagagaccttgaaa--gtgaccagaatggacataaatca 534
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 atctttgctagcatctttggtcagagaccttgaaacagtgaccagaatggacataaatca 740
Query: 535 catt---ct-gacagaggacagggcggcccagc 563
|||| || |||||||||| ||||||||||||
Sbjct: 741 catttgtcttgacagaggacggggcggcccagc 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 973
Length adjustment: 10
Effective length of query: 553
Effective length of database: 963
Effective search space: 532539
Effective search space used: 532539
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_i14.g1 MSMg01no416_i14.g1 CHROMAT_FILE:
MSMg01no416_i14.g1 PHD_FILE: MSMg01no416_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:11 2005
(491 letters)
>mm_chr4_40425174_40426065
Length = 892
Score = 905 bits (468), Expect = 0.0
Identities = 486/492 (98%), Gaps = 1/492 (0%)
Strand = Plus / Minus
Query: 1 cttcactgagattttcggttgagcttcaaacatttgtgcgtgtttccatcccctctctag 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cttcactgagattttctgttgagcttcaaacatttgtgcgtgtttccatcccctctctag 633
Query: 61 cgttttgttttgctttagttaggaactgaaacacagaaaagtcctggttagagttagttg 120
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 632 cattttgttttgctttagttaggaactgaaacacagaaaagtcttggttagagttagttg 573
Query: 121 aatatctaaaatttcagttcacctataagttactattacatacatatgaaatataatctc 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 572 aatatctaaaatttcagctcacctataagttactattacatacatatgaaatataaactc 513
Query: 181 tgagggaagtacttcaacaagagtgctttggaatatgagaaattaccatgttaggcctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgagggaagtacttcaacaagagtgctttggaatatgagaaattaccatgttaggcctat 453
Query: 241 ttacttgttatttttcttgttggacattgtgctttgaagactaaccttgctataacctag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttacttgttatttttcttgttggacattgtgctttgaagactaaccttgctataacctag 393
Query: 301 ctgtgagaggcagtgttctgaagaacatcttatcgttctccaccctgcatcttcgagcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctgtgagaggcagtgttctgaagaacatcttatcgttctccaccctgcatcttcgagcca 333
Query: 361 catgtgtgaagagaaggctgagcagccagatgaacagtcacacacatctctgccccctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 catgtgtgaagagaaggctgagcagccagatgaacagtcacacacatctctgccccctct 273
Query: 421 gcaa-ggagacagcttttccatggtaagttttcatttctgtgggcatatggtaaaacacc 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gcaagggagacagcttttccatggtaagttttcatttctgtgggcatatggtaaaacacc 213
Query: 480 aataccacttca 491
||||||||||||
Sbjct: 212 aataccacttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 892
Length adjustment: 10
Effective length of query: 481
Effective length of database: 882
Effective search space: 424242
Effective search space used: 424242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
