BAC Information

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BAC

Clone NameMSMg01-416I21
Chromosome4 (Build37)
Map Location 89,242,805 - 89,318,105
singlet/doubletdoublet
Overlap genenone
Upstream geneMrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785
Downstream geneDmrta1, Zfp352, LOC619842, LOC435792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416I21.T7 (MSMg01no416_i21.b1)MSMg01-416I21.TJ (MSMg01no416_i21.g1)
ACCAG512344AG512345
length724751
length of high quality
(start - end)		693 (27 - 719)485 (79 - 563)
definitionCHROMAT_FILE: MSMg01no416_i21.b1 PHD_FILE: MSMg01no416_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:12 2005CHROMAT_FILE: MSMg01no416_i21.g1 PHD_FILE: MSMg01no416_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,242,805 - 89,243,482)(89,317,621 - 89,318,105)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCATA
AGGTGGTTGCTTGCATTGTATGAAGTGCATTGAGGTCAAGTTGTGCCTGG
GAGTGCTGAATTGTCCACTTCCCGAAGGGTCTGCAAAAGCAGTCGTGGTT
GCCAGTGAAATCAGATCCTGGGCTGGCCAGATATTTCAAAGAGAATCTGT
CTTTTAGAAGGGAAAATAACCCTCACAGTATTAATTATAAAGAAACAGGA
TACATGACAAGTACTTTCAAGACCAGAGAAGTATTTCCTAGTAGAAAAAG
AAAAAACTTCCAAAAAGTCATATTTAAGCAGAGAGTGTTTGATATTCATG
AAATCAGAATAAAAGGACTGATTTGAATAGCTCAAAGGTTTCTGCTTTTC
CCTTTTCCCTAGCTAAGCTGTTTGAGTTCCTGTCTCCAACTAGAGGAGTA
GCTTTTCCCACAGGATAGAAATATTGAGCATCCACAGACCTGTAACCTCC
TCTTTGCCTATTTGCATGGCCCCAGGGCGTGAGGACAGTAGACACAGACA
TTTCCTCATGGGGTATCCAGTTCAACAGGAGAATAGACTTCAAACAGTAA
AGTGTATGCTATACACAGGGTGCAATGGGATCACATAAGAAAAGGACCTC
TCTTCTAGGCTGAGGAGAGGAGTCAGAGATACTCATCTTTATCTAGATTG
CACAGGGTTAATAATGTCTATTTN

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAGTTGAACAAAGAAAGCCA
CTTCGGTATTTATCTTTGTCACTGCCTGGTTTCATGCATCTAAATGGCTA
TAGTATTACATGAACACTGTATAAAACATTGATAGAGCAGGATGCTAGCT
TTTATTACACTTTTACACCCTCAGAAGCATGCTTCATTTCTTCTCTCTGT
GTTCGGCCGCTGGCATCTGGCCCTGCCGAGGGAAACCCTGCAATGGCACT
TCAGCTTTCTCCACTTTCACCTACATTTTCTTCCAGGATTGAGGTGGGAT
CATTATGAGGCAATCAATGCCAAAGATTGTTGTCAATTTTCCACTGCGTT
GGCTTAAATAAACACTTAGTGTAAGCGAGGGGTGCAGGTGGGGGCGGGGG
GACGCACTCACACAGATGCACTGTCGTGCAGATACATGCTCTCACAAAGA
CACACTTTGTCATGGTTCACTTGGAAAAATCCGAAAGGAAAAGGAGGAGG
TAGATGAATACTAAAGCCGGGGAGAAAAGGGAACTAATTTAGAGATAATG
AGTGGAAGACTGCCTCTCTAAAGAGAACAAGTGTGTCTTTATATGGAGGT
TAGCCTTTGAGCAAGCTTACATGTGAAGCCCTGGTCCAATACCGGTTTTT
ACCATAAGGGAAGGGAAAAATAAGAGGGGCTGGTTATTCTTACCAACCGG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_i21.b1 MSMg01no416_i21.b1 CHROMAT_FILE:
MSMg01no416_i21.b1 PHD_FILE: MSMg01no416_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:12 2005
         (693 letters)



>mm_chr4_89242590_89243682
          Length = 1093

 Score = 1234 bits (638), Expect = 0.0
 Identities = 668/678 (98%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattcataaggtggttgcttgcattgtatgaagtgcattgaggtcaagttgtgcctggg 75
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcataaggtgggtgtttgcattgtatgaagtgcattgaggtcaagttgtgcctggg 275

                                                                       
Query: 76  agtgctgaattgtccacttcccgaagggtctgcaaaagcagtcgtggttgccagtgaaat 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agtgctgaattgtccacttcccgaagggtctgcaaaagcagtcgtggttgccagtgaaat 335

                                                                       
Query: 136 cagatcctgggctggccagatatttcaaagagaatctgtcttttagaagggaaaataacc 195
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 336 cagatcctgggctggccagatatttcaaagagaatctgtcttttaggagggaaaataacc 395

                                                                       
Query: 196 ctcacagtattaattataaagaaacaggatacatgacaagtactttcaagaccagagaag 255
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 396 ctcacagtattaattataaagaaacaggatgcatgacaagtactttcaagaccagagaag 455

                                                                       
Query: 256 tatttcctagtagaaaaagaaaaaacttccaaaaagtcatatttaagcagagagtgtttg 315
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 456 tatttcctagtagaaaaagaaaaaacttccaaaaagtcatatttaagtagagagtgtttg 515

                                                                       
Query: 316 atattcatgaaatcagaataaaaggactgatttgaatagctcaaaggtttctgcttttcc 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 516 atattcatgaaatcagaataaaaggactgatttgaatagctcaaaggtttctgcttttct 575

                                                                       
Query: 376 cttttccctagctaagctgtttgagttcctgtctccaactagaggagtagcttttcccac 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cttttccctagctaagctgtttgagttcctgtctccaactagaggagtagcttttcccac 635

                                                                       
Query: 436 aggatagaaatattgagcatccacagacctgtaacctcctctttgcctatttgcatggcc 495
           ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 636 aggatagaaatattgagcatccacagacctgtatcctcctcattgcctatttgcatggcc 695

                                                                       
Query: 496 ccagggcgtgaggacagtagacacagacatttcctcatggggtatccagttcaacaggag 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ccagggcgtgaggacagtagacacagacatttcctcatggggtatccagttcaacaggag 755

                                                                       
Query: 556 aatagacttcaaacagtaaagtgtatgctatacacagggtgcaatgggatcacataagaa 615
           |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 756 aatagacttcaaacagtagagtgtatgctatacagagggtgcaatgggatcacataagaa 815

                                                                       
Query: 616 aaggacctctcttctaggctgaggagaggagtcagagatactcatctttatctagattgc 675
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aaggacctctcttctaggctgaggagaggagtcagagatactcatctttatctagattgc 875

                             
Query: 676 acagggttaataatgtct 693
           ||||||||||||||||||
Sbjct: 876 acagggttaataatgtct 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no416_i21.g1 MSMg01no416_i21.g1 CHROMAT_FILE:
MSMg01no416_i21.g1 PHD_FILE: MSMg01no416_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:13 2005
         (485 letters)



>mm_chr4_89317421_89318305
          Length = 885

 Score =  930 bits (481), Expect = 0.0
 Identities = 484/485 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagttgaacaaagaaagccacttcggtatttatctttgtcactgcctggtttcatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgagttgaacaaagaaagccacttcggtatttatctttgtcactgcctggtttcatgca 626

                                                                       
Query: 61  tctaaatggctatagtattacatgaacactgtataaaacattgatagagcaggatgctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctaaatggctatagtattacatgaacactgtataaaacattgatagagcaggatgctag 566

                                                                       
Query: 121 cttttattacacttttacaccctcagaagcatgcttcatttcttctctctgtgttcggcc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 cttttattacacttttacaccctcagaagcatgcttcatttcttctctctgtgttccgcc 506

                                                                       
Query: 181 gctggcatctggccctgccgagggaaaccctgcaatggcacttcagctttctccactttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctggcatctggccctgccgagggaaaccctgcaatggcacttcagctttctccactttc 446

                                                                       
Query: 241 acctacattttcttccaggattgaggtgggatcattatgaggcaatcaatgccaaagatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acctacattttcttccaggattgaggtgggatcattatgaggcaatcaatgccaaagatt 386

                                                                       
Query: 301 gttgtcaattttccactgcgttggcttaaataaacacttagtgtaagcgaggggtgcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttgtcaattttccactgcgttggcttaaataaacacttagtgtaagcgaggggtgcagg 326

                                                                       
Query: 361 tgggggcggggggacgcactcacacagatgcactgtcgtgcagatacatgctctcacaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgggggcggggggacgcactcacacagatgcactgtcgtgcagatacatgctctcacaaa 266

                                                                       
Query: 421 gacacactttgtcatggttcacttggaaaaatccgaaaggaaaaggaggaggtagatgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacacactttgtcatggttcacttggaaaaatccgaaaggaaaaggaggaggtagatgaa 206

                
Query: 481 tacta 485
           |||||
Sbjct: 205 tacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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