BAC Information

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BAC

Clone NameMSMg01-417E10
Chromosome4 (Build37)
Map Location 45,046,982 - 45,047,352
singlet/doubletsinglet
Overlap geneFbxo10
Upstream geneGne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e
Downstream gene1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417E10.T7 (MSMg01no417_e10.b1)MSMg01-417E10.TJ (MSMg01no417_e10.g1)
ACCAG512895AG512896
length897777
length of high quality
(start - end)
40 (98 - 137)371 (79 - 449)
definitionCHROMAT_FILE: MSMg01no417_e10.b1 PHD_FILE: MSMg01no417_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:07 2005CHROMAT_FILE: MSMg01no417_e10.g1 PHD_FILE: MSMg01no417_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTCAAAATTTGCGTGCGCTAGACGAATCACTTTTCAAAGAGGAGCCGN
GGAATTCTCTGTTTCCTCACATATACCCACAAGAATTGAAGACCGGTACG
CACGCTTTCGCTTCCCTTTGAAGGTCATCCAACTGCATCAGTTACTCACA
AAGACTGTTAAACTGCTGCCAGATACAGCTTATTTAACTGATTTCCACCA
ATGCACATGACTCCACCTACAATACCTAACTTGCATCTATATATCCGGAT
TGTCCCTAATCCCGTGTCTTCTTCTATCTTACTCCAATCATCCCATCAGA
TGCCTACACTCTCCGTTTTTTTTTTTTCCGCCCCTGACACATTCTCCTCT
ATTGTCTGTTCCTTTTTTATTCCTTTATTTACCCCCTGCTTCTTTCCCTT
CTTTTCACCTCTCCTCCCTCCTACTGCTTCTTTCCACTTATCCACCCTCC
CCCATCCCCTTCCTTTCTCCCCCCCCAATTTTTTCCATCTTCATCCTTTC
ACTTCTCTCCATCCCCCCCATCTTTTCCTACTCCATTTACCTCCCTTTAT
CTCTACTACTTTATCACCTCTCTGCCCCCCCCCACCCTTTTTCTACCTTC
ACTCTTTTCTCCTTCTATTTTACCCTTACCATTCTTACACCACTCAAATT
CAATATACATCCCCCTTATATCCATTACTTTCCTTTATCTCTCCCACCAC
TTCTATTCTCTTCCATAACCCCTCTCCCTTCTCCTCCCCTTTCCTTTCTC
CTTCATCGCCCTACCCCTTCCCTTTTTTTCTACTCCCCCCCTTTTTCACT
CCCTTCTCTCCCCCTTATTCTCATACCTTATATCCCCCACTTCCTTTTCC
CCTCACTTCCTCTCCCTCACCCATACCCCCTTATTTCCTATCCAATC
TTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGCCATAGCAGGAGCAAGCT
GATGAGAGTCTTGAGTTCTGCAGTCTCACAGTGGAAGTGGTGGTACCAGT
GGGGAGGCCTACTGGTCACTGAACCTCCAGCAAATGTGTGGACCAAATTA
TGACCCCAGAAGCACCTCCTTTAAAATATAGAACTTTATTTTGGTTACTG
AGATTTTTGTAAGTACTTGCTTCACAGAAAAGTCATTTCTTACAAAATAA
CAAAGGCAGCATTTTTATTTTTTTACTCACATTGGGGCCACCAAACAAGT
GCAGTGAACAGTGCTACACATGGGAAGGGCCAGTGTTCTTTTCCCCAGAG
TGCTTAGGGAGAAATCAGAGCTCCCCCTCCCACCCACCTAACACAGCAGC
ACCTAGGGCTCCACAGAACCAGCATGGGATATGGTCCAGTGTAGGACAGT
GACCCCCAATGCTGGCGATGGCTCTTGCCTATTGGTCTCAGCGGGATAGG
GCTCGTTTTTTCCCAATTTGTTCCTGCCTTCCTACCCCATTCTTTCCCGA
TTTCCCCATTTTTTCCCCCCCCTTTTTTTTCCCACCGTTCCCCCCTTTGG
TATTTTTTCCTTTTACTTTACCTCCGCATTTTTTCCTTGTTCCCCTCCCC
CCCTCCTTATTTCTTTTTTTCTTTTCTCCCCCATTTTTCTTTTTTTATTT
CTCCTTTCTTTCTTCCCTTTTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_e10.g1 MSMg01no417_e10.g1 CHROMAT_FILE:
MSMg01no417_e10.g1 PHD_FILE: MSMg01no417_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:07 2005
         (371 letters)



>mm_chr4_45046782_45047552
          Length = 771

 Score =  675 bits (349), Expect = 0.0
 Identities = 365/377 (96%), Gaps = 12/377 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagccatagcaggagcaagctgatgagagtcttgagttctgcagtctcacagtggaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagccatagcaggagcaagctgatgagagtcttgagttctgcagtctcacagtggaagt 260

                                                                       
Query: 61  ggtggtaccagtggggaggcctactggtcactgaacctccagcaaatgtgtggaccaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtggtaccagtggggaggcctactggtcactgaacctccagcaaatgtgtggaccaaat 320

                                                                       
Query: 121 tatgaccccagaagcacctcctttaaaatatagaactttattttggttactgagattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgaccccagaagcacctcctttaaaatatagaactttattttggttactgagattttt 380

                                                                       
Query: 181 gtaagtacttgcttcacagaaaagtcatttcttacaaaataacaaaggcagcatttttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaagtacttgcttcacagaaaagtcatttcttacaaaataacaaaggcagcatttttat 440

                                                                       
Query: 241 ttttttac------tcacattggggccaccaaacaagtgcagtgaacagtgctacacatg 294
                 ||      ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ------acagcgactcacattggggccaccaaacaagtgcagtgaacagtgctacacatg 494

                                                                       
Query: 295 ggaagggccagtgttcttttccccagagtgcttagggagaaatcagagctccccctccca 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ggaagggccagtgttcttttccccagagtgcttagggagaaatcagagctccccctccca 554

                            
Query: 355 cccacctaacacagcag 371
           |||||||||||||||||
Sbjct: 555 cccacctaacacagcag 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)