BAC Information

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BAC

Clone NameMSMg01-417I05
Chromosome4 (Build37)
Map Location 18,070,505 - 18,071,023
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040173, Mmp16
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417I05.T7 (MSMg01no417_i05.b1)MSMg01-417I05.TJ (MSMg01no417_i05.g1)
ACCAG513075AG513076
length744749
length of high quality
(start - end)
573 (50 - 622)519 (77 - 595)
definitionCHROMAT_FILE: MSMg01no417_i05.b1 PHD_FILE: MSMg01no417_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:25 2005CHROMAT_FILE: MSMg01no417_i05.g1 PHD_FILE: MSMg01no417_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAACTGAGGAATACCGAAAGGCTGAGATGCACCTAAGGAA
ATAGTCAACATTCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGA
GATTCCTCCTCACACCAGTCAGAATGGCTAAGATCAAAAACGCAGGTGAC
AGCAGATGCTGGTGAGGATGTGGAGAAAGAGCAACACTCCTCCATTGCTG
GTGGGATTGCACACTGGTACAACCACTCTGTAAATCAGTCTGGTGGTTCC
TCAGAAAATTGGACATAGTACTACTACAATATCCAAGAACTTCTCTCCTG
AGCATATACCCAGAAGATGTTCCAACTTGTAATAAGTACACATGTTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTTGAAAGAACCCA
GATGTCCGCCACAGAGAAATAGATATTGAAAATGTGCTACATTTACACAA
TGGAGTACTACTCAGGTATTAAAGCAATGAATTCATGAAATTCTTAGGCA
AATGGATGGATCTGGAGGCCATCATCCTGAGTGAGGTAACCCAATCACTA
AAGAATACACATGATATGCACTCACTGAGAAGTGGATATTATCCCAGAAG
CTTATAATATACAAGATATTATTTACCATACACATGAGATCTCCGAATAA
GAAAGACCCGAGTGAGGGTACTTTGTTCCTTCTTAGAATGGGGA
CCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAAAGATAATCTGAAAATATCA
GTCACATGGAAATTTGACAGAAGTAGATGGTAGGAATGTCAGTTTATTTT
GTACTTGTACTAATGAGTGACACTAAAGGTCTTCAGATATCGTTTCTATC
ACAATACAGTGTTATAGTTAAAGGTATTAGTAACTGTTGCTACTTCAGTC
CTGTAGACTTTATTACCTTCCAAAGTTGTCACTCTCTTCCAGTACTTCAG
GTTTAGTTCATGTTTTCTATATCTGCCATCTTTCCCTCTATGAGTTTTCC
TAAGAAAGTTGTGTTAGTACTCAAATCCAGGACATGTTTGTAATAGTCTC
CTGAGAAATGAACACAGTGATTATGAAAGTCCTATTTAACTTCATGTAAC
TATTGATTGGTTATTTAAATTATTAAAGACACATTGTAGAGAATTGTATA
CTTAGGTCCTCAAAGTCCTAAGAGCAATATACATGTGCTGTCTTTTAAGT
CTTGGATGCCATTCATAAGTAGGTGTGTCATAAGTTTGGACTTCCAAATG
AAGCTTGTTAGAGTTGCTAGAACATCTCAGAAGTGAGGTCTTGTGAAGAC
ATTTTAAGTCACTAGGTCTAAACACTCAAAGGATAGCAGAGGGTTCAATT
CTCACTTTTCTTTCCGTCCTGGAAAGGGAAGGTATTAAATCTTCCCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_i05.g1 MSMg01no417_i05.g1 CHROMAT_FILE:
MSMg01no417_i05.g1 PHD_FILE: MSMg01no417_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:25 2005
         (519 letters)



>mm_chr4_18070305_18071223
          Length = 919

 Score =  996 bits (515), Expect = 0.0
 Identities = 518/519 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaagataatctgaaaatatcagtcacatggaaatttgacagaagtagatggtaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaagataatctgaaaatatcagtcacatggaaatttgacagaagtagatggtaggaa 260

                                                                       
Query: 61  tgtcagtttattttgtacttgtactaatgagtgacactaaaggtcttcagatatcgtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcagtttattttgtacttgtactaatgagtgacactaaaggtcttcagatatcgtttc 320

                                                                       
Query: 121 tatcacaatacagtgttatagttaaaggtattagtaactgttgctacttcagtcctgtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcacaatacagtgttatagttaaaggtattagtaactgttgctacttcagtcctgtag 380

                                                                       
Query: 181 actttattaccttccaaagttgtcactctcttccagtacttcaggtttagttcatgtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actttattaccttccaaagttgtcactctcttccagtacttcaggtttagttcatgtttt 440

                                                                       
Query: 241 ctatatctgccatctttccctctatgagttttcctaagaaagttgtgttagtactcaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatatctgccatctttccctctatgagttttcctaagaaagttgtgttagtactcaaat 500

                                                                       
Query: 301 ccaggacatgtttgtaatagtctcctgagaaatgaacacagtgattatgaaagtcctatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaggacatgtttgtaatagtctcctgagaaatgaacacagtgattatgaaagtcctatt 560

                                                                       
Query: 361 taacttcatgtaactattgattggttatttaaattattaaagacacattgtagagaattg 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 taacttcatgtaactattgattggttatttaaattattaaacacacattgtagagaattg 620

                                                                       
Query: 421 tatacttaggtcctcaaagtcctaagagcaatatacatgtgctgtcttttaagtcttgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatacttaggtcctcaaagtcctaagagcaatatacatgtgctgtcttttaagtcttgga 680

                                                  
Query: 481 tgccattcataagtaggtgtgtcataagtttggacttcc 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgccattcataagtaggtgtgtcataagtttggacttcc 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)