BAC Information

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BAC

Clone NameMSMg01-417L18
Chromosome4 (Build37)
Map Location 44,822,379 - 44,996,706
singlet/doubletdoublet
Overlap geneZcchc7, D4Wsu132e, Grhpr
Upstream geneOlfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618
Downstream geneZbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417L18.T7 (MSMg01no417_l18.b1)MSMg01-417L18.TJ (MSMg01no417_l18.g1)
ACCAG513245AG513246
length749775
length of high quality
(start - end)		568 (46 - 613)472 (74 - 545)
definitionCHROMAT_FILE: MSMg01no417_l18.b1 PHD_FILE: MSMg01no417_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:42 2005CHROMAT_FILE: MSMg01no417_l18.g1 PHD_FILE: MSMg01no417_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,822,379 - 44,822,942)(44,996,235 - 44,996,706)
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATCATGACTGGATGCATACAACAGAAAGAGCAGAGTCCGGTCCC
TCATCCTCATTCTCTCTTGGTTCCTTGAAGACAGTTCATAGACATAAACT
CAGGTAATGTGGTTCTTTGGATTCGCTGCTTCTTTCACTTGCAGTGCTTT
TCAGAGCAGTCCAGTAACTGTCAGAACTTACTGCTCTTTTAAGGGCTGAA
TTATAGGCATATGTCACATTTTTGTCACTCAGTTTGTAGACATTTGAGGT
AGTCTCACTTTTTGGCTATTGGGAATAATGTTTGTTGTGAAATTTTTTTT
TTCATACATGTTTTTAGTTCTGTTGGGCATGTACTTGGGATAAGAACTGC
TGACTCTTATTTTCTCTCTTAGATTTTAGAATTTATTGTTTGTTAAATGT
TTCTTTCCTACCTTCCAATCTCACCAGAGATCTCCATATCTGGTCTTAAT
TACTTTCTTGATCACCCCTATTGTTTGCACCTGAAGAAATTGTACTTACC
TTTCTAGGCATATTTCAAAAGAATTTCCTATGTAAGAACTTTGCTAGCTG
CTCTACAAAAGAATCAGTTTTGTATTGTTTTTAACATGACACACACATCA
TGCCTTTATATCAAATTTTGTGATATCATGGAATTATGGATATTATATTT
ACCCGATTATGAATTCCTGAATATAGGAATCATTACCAGATTTCTCCGA

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAGCCATGCACTGGGTCGATCCCAGG
AATACCTACTTATCATGTCTTAGATGACAGGAAGAGGCTGCTATCTCTGT
CCCTTGTACTAAGATGATCCCCCTCTGCCACCTACAACAGACACTCAGGG
AGTGTCCCGTCCCAGTCGCAGGACATTCCTCGGGTCATTTCAGGGCTCTT
ACCCTCACCCACCAGTGGCCTTGGGTCCCCTTTAGCCACATCAAAGGCCT
CTCCCTATGGATACTCCAGAAGTGCTGAGGTGGCCGGGGCGTGGCCTTCT
CACGAGCTCTCTTCCACTAAAGTCAAGGCCAGAGTGAGAGTGTCTCTGCA
CTGAATCTGGCGGCCTTGGGTCTGAAGCGCTCTTTAAACTGCCACTGTAT
AATCCACAGAATGATGTTCACCCTATCCAGGAATGAGGCCTGGGGCCACA
GCTGCGTGCACACTCCATGGGTATCCATCGGTGCTAGGCACAGACAGTGC
TGGGCCCTCTGCCCTGCAGCACACAGGCCCAGAGAGATCTCTAGGTCCCA
AAAAAGGCTCTGGCACACAGAGAGGGTCACAAGCCAGGAAACCTCCTCCA
CCCCTTATCTATTTCCAATCTCACAAAGGGAAAAAAAGGCTTTTGTCCTC
TTGGAGCCCCCTGTAACTTTAAATCCCATTGGGGACAAACTGCGCCCCTA
TATTTTTTTTGGGGAAACTTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_l18.b1 MSMg01no417_l18.b1 CHROMAT_FILE:
MSMg01no417_l18.b1 PHD_FILE: MSMg01no417_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:42 2005
         (568 letters)



>mm_chr4_44822175_44823142
          Length = 968

 Score = 1060 bits (548), Expect = 0.0
 Identities = 560/564 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatcatgactggatgcatacaacagaaagagcagagtccggtccctcatcctca 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatcatgagtggatgcatacaacagaaagagcagagtccggtccctcatcctca 264

                                                                       
Query: 65  ttctctcttggttccttgaagacagttcatagacataaactcaggtaatgtggttctttg 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 ttctctcttggttccttgaagacagttcatagacataaactcaggtaatgtggtcctttg 324

                                                                       
Query: 125 gattcgctgcttctttcacttgcagtgcttttcagagcagtccagtaactgtcagaactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gattcgctgcttctttcacttgcagtgcttttcagagcagtccagtaactgtcagaactt 384

                                                                       
Query: 185 actgctcttttaagggctgaattataggcatatgtcacatttttgtcactcagtttgtag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actgctcttttaagggctgaattataggcatatgtcacatttttgtcactcagtttgtag 444

                                                                       
Query: 245 acatttgaggtagtctcactttttggctattgggaataatgtttgttgtgaaattttttt 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 acatttgaggtagtctcactttttggctattgggaataatgtttgttgtgaatttttttt 504

                                                                       
Query: 305 tttcatacatgtttttagttctgttgggcatgtacttgggataagaactgctgactctta 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 tttcatacatgtttttagttctgttgggcatgtacttgggataagaactgctgactctca 564

                                                                       
Query: 365 ttttctctcttagattttagaatttattgtttgttaaatgtttctttcctaccttccaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttttctctcttagattttagaatttattgtttgttaaatgtttctttcctaccttccaat 624

                                                                       
Query: 425 ctcaccagagatctccatatctggtcttaattactttcttgatcacccctattgtttgca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctcaccagagatctccatatctggtcttaattactttcttgatcacccctattgtttgca 684

                                                                       
Query: 485 cctgaagaaattgtacttacctttctaggcatatttcaaaagaatttcctatgtaagaac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctgaagaaattgtacttacctttctaggcatatttcaaaagaatttcctatgtaagaac 744

                                   
Query: 545 tttgctagctgctctacaaaagaa 568
           ||||||||||||||||||||||||
Sbjct: 745 tttgctagctgctctacaaaagaa 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no417_l18.g1 MSMg01no417_l18.g1 CHROMAT_FILE:
MSMg01no417_l18.g1 PHD_FILE: MSMg01no417_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:42 2005
         (472 letters)



>mm_chr4_44996035_44996906
          Length = 872

 Score =  866 bits (448), Expect = 0.0
 Identities = 466/472 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagccatgcactgggtcgatcccaggaatacctacttatcatgtcttagatgacaggaa 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aaagccacgcactgggtcgatcccaggaatacctacttatcatgtcttagatgacaggaa 613

                                                                       
Query: 61  gaggctgctatctctgtcccttgtactaagatgatccccctctgccacctacaacagaca 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gaggctgctatctttgtcccttgtactaagatgatccccctctgccacctacaacagaca 553

                                                                       
Query: 121 ctcagggagtgtcccgtcccagtcgcaggacattcctcgggtcatttcagggctcttacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctcagggagtgtcccgtcccagtcgcaggacattcctcgggtcatttcagggctcttacc 493

                                                                       
Query: 181 ctcacccaccagtggccttgggtcccctttagccacatcaaaggcctctccctatggata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 492 ctcacccaccagtggccttgggtcccctttagccacatcaaaggcctctccccatggata 433

                                                                       
Query: 241 ctccagaagtgctgaggtggccggggcgtggccttctcacgagctctcttccactaaagt 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctccagaagtgctgaggtggctggggcgtggccttctcacgagctctcttccactaaagt 373

                                                                       
Query: 301 caaggccagagtgagagtgtctctgcactgaatctggcggccttgggtctgaagcgctct 360
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 372 caaggccagagtgagagtgtctctgcaccgaatctggcggccttgggtctgaagtgctct 313

                                                                       
Query: 361 ttaaactgccactgtataatccacagaatgatgttcaccctatccaggaatgaggcctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttaaactgccactgtataatccacagaatgatgttcaccctatccaggaatgaggcctgg 253

                                                               
Query: 421 ggccacagctgcgtgcacactccatgggtatccatcggtgctaggcacagac 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggccacagctgcgtgcacactccatgggtatccatcggtgctaggcacagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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