BAC Information

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BAC

Clone NameMSMg01-417N07
Chromosome4 (Build37)
Map Location 102,561,225 - 102,561,725
singlet/doubletsinglet
Overlap geneSgip1
Upstream geneC130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739, Pde4b
Downstream geneTctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940, EG665460
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417N07.T7 (MSMg01no417_n07.b1)MSMg01-417N07.TJ (MSMg01no417_n07.g1)
ACCAG513318AG513319
length770639
length of high quality
(start - end)
521 (48 - 568)305 (87 - 391)
definitionCHROMAT_FILE: MSMg01no417_n07.b1 PHD_FILE: MSMg01no417_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:50 2005CHROMAT_FILE: MSMg01no417_n07.g1 PHD_FILE: MSMg01no417_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCCAGTTACAAAAAAAAAATTAGTAGTGAAGGGGAACCCCCAC
CCCCAGTGCATTTTAGACATTACACGTAGTGATTTCTTAAAATGTAGAGA
AGGCAGTGACATATTTTGAAAAAGTTTTGACTCATTTTCTCAACCTTTTT
GTTCAGGGCCTTGAAACAAAAAACCAAAACAGCACCACTGTCTTAGTTGT
AACTTGTTCTGGTGGGTCTGGGTGCTGTTGATTCTTAAACTACCTCTGGG
ATCTATTGCAATGTCTGCAGAGGTTTGGCAGAAAGGACTGGAAGCTTTAA
TGTCCCACCCTTGGCATCCCTAAACCAATCCAAATCGAGTTTGCCTAAAG
CTGACTTGGTGAGCAATGCAAGTTGAGCATCTACCCTTTAGGTCCCTGAG
TGCAGGAGGTCTGTACAGGGCATAGAACCAGGTGGTTCATCTTTCTTGGT
GTGCAGGAGCCTGGAGCTCTCCTCTCCACCACCGATGACTCTCTTTTCCA
CTGAATTCAATGGGGTGCTGAACCCTCTGCCAAAGCAAAGACAGGGAAGG
GTGTGTTGTTATCTAGCCCCAGCAAATCTGTGGAGGTTGCTCCCTGGCAT
GGTACTTTTTTGGCCGTAAATTGTCCGGGTTCTCCGGGATATGCTCCCGT
TCACCCCAATTTCTTACGTTCCTATCTTTTTTCTCCTTTTCCACAACTTC
TCTCCAATCCCCCCCTTTGG
GTCGAATNNNTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTGATGTGCTGA
CAAAATACATATACCCATCAAATAAAATTTAATTNTGAGAAAAAAAATTT
AAGTGGGAATAGAATTTATACAGATACTTGACTCATTCTAATAGAATTTA
GTATTCATCTATGGATTTCTATATAAACCTTAAAAAAAAAGAAAGTAGCC
ATTATAGTAAGAGGTTGAGTGCCAATAGAATGTTAGTGCTTATATTTAAC
ATTTATGAAAATTATAACATATTTATGCATTTTCAGACTAGACATGTTCT
ATATCAATTTTGGAAAGGTTTACTAGACAACTATGTTTATTAATAATTCA
GAAAAACCTTTCTCGTCTTTTAGGTTTTCCATTTATTATTGGAAATTTAG
GGATTTGGGAAACCGGATCTTAAAAAAAAATTTTTTGGGGGGGGGGAAAA
AAAGCTTTAAAAAACAATACCTCTCCCCCGAAAAAAAAAATTTTTTGGGG
GGAAGATATTCATGTCTCTCCCCCAAAATAAAATTTGTTGTGCGTGCACC
TTTCCTCTCCAGTAATGCGGGGTGGTCAGTTTTATATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_n07.b1 MSMg01no417_n07.b1 CHROMAT_FILE:
MSMg01no417_n07.b1 PHD_FILE: MSMg01no417_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:50 2005
         (521 letters)



>mm_chr4_102561005_102561925
          Length = 921

 Score =  891 bits (461), Expect = 0.0
 Identities = 491/501 (98%)
 Strand = Plus / Minus

                                                                       
Query: 21  aaaaaaaaattagtagtgaaggggaacccccacccccagtgcattttagacattacacgt 80
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 721 aaaaaaaaattagtagtgaaggggaacccccacccccagtgcattttagacattacacat 662

                                                                       
Query: 81  agtgatttcttaaaatgtagagaaggcagtgacatattttgaaaaagttttgactcattt 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agtgatttcttaaaatgtagagaaggcagtgacatattttgaaaaagttttgactcattt 602

                                                                       
Query: 141 tctcaacctttttgttcagggccttgaaacaaaaaaccaaaacagcaccactgtcttagt 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tctcaacctttttgttcagggccttgaaacaaaaaaccaaaacagcaccactgtcttagt 542

                                                                       
Query: 201 tgtaacttgttctggtgggtctgggtgctgttgattcttaaactacctctgggatctatt 260
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgtaacttgttctgttgggtctgggtgctgttgattcttaaactacctctgggatctatt 482

                                                                       
Query: 261 gcaatgtctgcagaggtttggcagaaaggactggaagctttaatgtcccacccttggcat 320
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcaatgtctgcagagttttggcagaaaggactggaagctttaatgtcccacccttggcat 422

                                                                       
Query: 321 ccctaaaccaatccaaatcgagtttgcctaaagctgacttggtgagcaatgcaagttgag 380
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 421 ccctaaaccaatccaaatcgagtttgcctaaagctgacttggtgagcaatgcaagttgcg 362

                                                                       
Query: 381 catctaccctttaggtccctgagtgcaggaggtctgtacagggcatagaaccaggtggtt 440
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 catctaccctttagatctctgagtgcaggaggtctgtacagggcatagaaccaggtggtt 302

                                                                       
Query: 441 catctttcttggtgtgcaggagcctggagctctcctctccaccaccgatgactctctttt 500
           | ||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 301 cgtctctcttggtgtgcaggagcctggagctctcctccccaccactgatgactctctttt 242

                                
Query: 501 ccactgaattcaatggggtgc 521
           |||||||||||||||||||||
Sbjct: 241 ccactgaattcaatggggtgc 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)