NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTAAACTGTCACCTTTTTTACATTTCAGAGTTAGAGTTAATAAT
AAAGATAGGTGCTACTAGGACCTATCCTTTAATCGCCATAAAGTTTAAAA
TTCCTTATTGTTTTTACAAATATGAAGGACATAGAGGTAGTAAAGGAAGG
GACACAAGAGGGACTGGAGGGAGAAGAGGGGGTTATTAAATTTTAATTGA
AATGTATTTGAAATATTTTAAAAAGATAAATTATTACGCATGCAGATTGT
AGGCAATTTTTATATACAACAGAGAATTGTATATTGAAATCGATTGAAAT
GTTAAGAAAGTCGGGATAACTATGAATATTTTCACTGATGGCTCATAGTG
CCCTGTCAAGGATGTGGAAGACTGGCCCTACCTACCATGACAGACTTTTT
ATGAGGCCTCACTATAGAAAAATATGCTCTCCAGCCTGCCCTCAGGGACT
CAGCACCAGAAGTATGTCATCACTAGTCTCCAAACCTCTAAAAGGTGCTC
CCAACCCCATGTATGCTCCTTTGTGTTCTTTCTACCTTTCTGCCTCTCTG
TCTTTCTCTTTCTCTTACTTTCTTTCATGTCTGCACATTAAGGGGGCCAT
TTGTTCCCCACTCCACTCTAATAAATCTCGGTTATAAAAACTGCTGTGTG
GTGTGATCTGACTGTGGGCCACTTGTTTTATACGGCCAAGAAACTCTTTC
CCTACAT

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCAT
CATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGT
GTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGG
TCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCA
ATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCT
TGATTTTGTTACCCTCTATCTTTTTGCGTGGGAGACAAGCTCTCTTCTCT
GAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGG
GAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAA
GGCCCAAAATAGGATCTTTCCCAGAAGCTGTGTTGTTTTGGTCCTTAATG
TGTTCTGTTGTCTGTTGTCCAATACGTTCTACCTCTCTCAAGCTTTGTGG
CTCTTTTTCTTCATGCTGCCTCTCGCTCCGTTTCTGACTTTGTTTCCTCC
CTCTCTCTTTCTTTTTCCCTTTCCTTCCCGTTCCCCAACCTTCTGTCTTT
CCGTATCCCCTCCTTGCTCTCTTGTGTCCGGCCGCTCCCTTTCTTATTTC
CTTTCCTTCTCTTTTCCTTTTTCTTCCCTTTCTTTTGCCCTTCCCTTCTT
CCCTTTTCCTGCTCCTTCCTTTT

Query= MSMg01no418_b17.b1 MSMg01no418_b17.b1 CHROMAT_FILE:
MSMg01no418_b17.b1 PHD_FILE: MSMg01no418_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:13 2005
         (586 letters)



>mm_chr4_25587020_25588001
          Length = 982

 Score =  851 bits (440), Expect = 0.0
 Identities = 534/570 (93%), Gaps = 16/570 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaaactgtcaccttttttacatttcagagttagagttaataataaagataggt 64
           ||||||||||||||| ||||||| || ||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattcctaaactgtaaccttttctatatttcagagttagag-taataataaagataggt 263

                                                                       
Query: 65  gctactaggacctatcctttaatcgccataaagtttaaaattccttattgtttttacaaa 124
           | ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 264 gatactaggacatatcctttaatcgccataaagtttaaaattccttattgattttacaaa 323

                                                                       
Query: 125 tatgaaggacatagaggtagtaaaggaagggacacaagagggactggagggagaagaggg 184
           |||||||| |||||||||||   |||||||||||  ||||||||||||||||| ||||||
Sbjct: 324 tatgaagggcatagaggtag---aggaagggacatgagagggactggagggaggagaggg 380

                                                                       
Query: 185 ggttattaaattttaattgaaatgtatttgaaatattttaaaaagataaattattacgca 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||  ||
Sbjct: 381 ggttattaaattttgattgaaatgtatttgaaatattttaaaaagataaatcatta--ca 438

                                                                       
Query: 245 tgcagattgtaggcaa-tttttatatacaacagagaattgtatattgaaatcgattgaaa 303
           |    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 439 t----attgtaggcaattttttatatacaacagagaattgtatattgaaattgattgaaa 494

                                                                       
Query: 304 tgttaagaaagtcgggataactatgaatattttcactgatggctcatagtgccctgtcaa 363
           ||||||||||||| |||||||  |||||||||||||||||||||||||| ||||||||||
Sbjct: 495 tgttaagaaagtcaggataac--tgaatattttcactgatggctcatagagccctgtcaa 552

                                                                       
Query: 364 ggatgtggaagactggccctacctaccatgacagactttttatgaggcctcactatagaa 423
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 553 ggatgtggaagactgaccctacctaccatgacagactttttatgaggcttcactatagaa 612

                                                                       
Query: 424 aaatatgctctccagcctgccctcagggactcagcaccagaagtatgtcatcactagtct 483
           ||||||||||||||||||||||||| |||||| || |||| |||||||||||||||||||
Sbjct: 613 aaatatgctctccagcctgccctcaaggactcggc-ccaggagtatgtcatcactagtct 671

                                                                       
Query: 484 ccaaacctctaaaaggtgctcccaaccccatgtatgctcctttgtgttctttctaccttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ccaaacctctaaaaggtgctcccaaccccatgtatgctcctttgtgttctttctaccttt 731

                                         
Query: 544 ct-gcctctctgtctttctctttctcttac 572
            | |||||||||||||||||||||||||||
Sbjct: 732 -tcgcctctctgtctttctctttctcttac 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 982
Length adjustment: 10
Effective length of query: 576
Effective length of database: 972
Effective search space:   559872
Effective search space used:   559872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)