BAC Information

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BAC

Clone NameMSMg01-418H20
Chromosome4 (Build37)
Map Location 139,605,958 - 139,606,204
singlet/doubletsinglet
Overlap geneIgsf21
Upstream geneTmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a
Downstream geneLOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418H20.T7 (MSMg01no418_h20.b1)MSMg01-418H20.TJ (MSMg01no418_h20.g1)
ACCAG513814AG513815
length765770
length of high quality
(start - end)
465 (70 - 534)247 (75 - 321)
definitionCHROMAT_FILE: MSMg01no418_h20.b1 PHD_FILE: MSMg01no418_h20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:42 2005CHROMAT_FILE: MSMg01no418_h20.g1 PHD_FILE: MSMg01no418_h20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGGAGGTAGCCACAACACCTGGTCATTTAATTATCGCTGAGC
TAATTGATAAATACACTTTGGTTCTGATCATGACAACAGCCAGTCTGGGG
AGACAGTGCCATCAGTTAGAGGTTTGCCTTGCAGGCACAGAGACCTGGGT
CTTGGAGCCCCAGAACCCACGGGACAAACTGATAATCCATGCTTGTGATT
CCAGCATTGGGGAGCTGGAGACGGGTGGATCCTTGGGGCTCACTGGCCAG
CCAGCTTCACCAACTCTGTGGGCTGCGGGCCCATGGAAGATTCTGTCTCA
AAAAGTCCAAGATGGTTGGCACCTAGGCAATAACACCTGAGGTTGTCCTC
TGTCCCCACCTATGCACAATGGTGCAAGCTCACTTGCACACACGTGAAGA
GGCATGCGTGCATGTGTATGTGTGCACACATATACACACATGCACACACA
TGTGCACACATACACATATATGCACACATTCATACACATGCACACACGTA
CACACATGCATGTATGCATGCACATGCTCACACATGGACACTGTCTCACC
CCTGCGCACATGTTTGTGTGACCCCCATTACGAATCACTTATACTCCCTT
GTCCTATGTATGGTCAATTGATATGCTTGCATGTTTGTTTGTTCCCACCT
TTTTTCTAACCCTCATACAGGTGTTTTTTTTTAATGCCCCATACTTCTTG
AATTTACCCTCTGAA
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGCAGGCTTCAGCCAAGCTCTGAC
TACTGGGTAGCAGCTGGGCACCTTGTAGAAAAAGGCTTCGCTCAGCTCTT
ACATGGATCCAAGAGAGAGTCAGTAGTGGAAGCAGTTGAGAATGTGTGAT
CATGCCGTGTATGTGTGTGTCCATGTGTGCATACTTACATTGCATGTGTG
TGCATGCCCATATTGAGGGCACATAGTTGATGTCAGAAATCACCCTCCAC
TGCACTTCTACCTCATTCATTTTTTCTGAGGGTCTCAATCAAATCCAGAG
CTCACTGATACAGCAAGTCTCGACAGCCAGCTTGCCCTAGGGATCCTGTC
TCTGTCTTCTGGGGCTGGAATTACAGGCAAACAACCACAGCCACACAGTG
TTTACATGGATTCCAGGGACCCCAACTGGACTCCTCGTGTTTGTGTGGTA
GCTGCTTTAACCACTGAGCTTCCCAGCCCTGACTGGACTTTATTTCTGAT
TATGAAATATGATATGTGGTAACCCCCTCTCATCAAATACCTCCCTGGAG
TTCCCCCTGAAAAATTACTTATTGATAAGTAAGCCAAACTGATAGATTAA
TGTGCCTCCCTGTTTATTTTTTTCTACCCGGACTTATCTTAAAGAAGCTT
TTAAAGTCATTGAATTCATTCTATCTCCTGTGTATTCTTCCCCACCTCTG
TTATATTACTATTTTTCCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_h20.g1 MSMg01no418_h20.g1 CHROMAT_FILE:
MSMg01no418_h20.g1 PHD_FILE: MSMg01no418_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:42 2005
         (247 letters)



>mm_chr4_139605758_139606404
          Length = 647

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgcaggcttcagccaagctctgactactgggtagcagctgggcaccttgtagaaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctgcaggcttcagccaagctctgactactgggtagcagctgggcaccttgtagaaaaag 388

                                                                       
Query: 61  gcttcgctcagctcttacatggatccaagagagagtcagtagtggaagcagttgagaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcttcgctcagctcttacatggatccaagagagagtcagtagtggaagcagttgagaatg 328

                                                                       
Query: 121 tgtgatcatgccgtgtatgtgtgtgtccatgtgtgcatacttacattgcatgtgtgtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgtgatcatgccgtgtatgtgtgtgtccatgtgtgcatacttacattgcatgtgtgtgca 268

                                                                       
Query: 181 tgcccatattgagggcacatagttgatgtcagaaatcaccctccactgcacttctacctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgcccatattgagggcacatagttgatgtcagaaatcaccctccactgcacttctacctc 208

                  
Query: 241 attcatt 247
           |||||||
Sbjct: 207 attcatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)