BAC Information

Click to search

BAC

Clone NameMSMg01-418K13
Chromosome4 (Build37)
Map Location 53,931,104 - 53,931,540
singlet/doubletsinglet
Overlap geneLOC100041280
Upstream geneOlfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124
Downstream geneLOC666901, LOC100041303, LOC384018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418K13.T7 (MSMg01no418_k13.b1)MSMg01-418K13.TJ (MSMg01no418_k13.g1)
ACCAG513942AG513943
length721689
length of high quality
(start - end)
445 (80 - 524)240 (56 - 295)
definitionCHROMAT_FILE: MSMg01no418_k13.b1 PHD_FILE: MSMg01no418_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:55 2005CHROMAT_FILE: MSMg01no418_k13.g1 PHD_FILE: MSMg01no418_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTATATCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCTGACTTACAGAGACCTTCTCTTTTCTCCATTTGT
TACAAAGATCGATGACTGAGAAATGCATTTAAGTGAAACTGAGGAACAAA
GAAGAGAAAATGGAGCCGAGGGAGGCACAGAGCGCCTGTGAGCCCCTTGA
CTGCTGGTCGTGTACATCGCTCATCCTCACATCTGCCGTCTGAAGGCATC
CATATATGTGCGTGTGTCTTTATAAGCCCCATGGCTTACTTAGTGAGGCC
ATCACAAACAGATGGGCAGCGAATATTATCTGCAGAGTGCAGCAGGCTTA
TAGACTGAGACTGGGGCTCTCTCTCTTTCTGCTGGATCCATTCCCCTCAA
TTTTGGAGTCATTACCCTGAGGCCGGGATGGAAATACTATTTCATTGAGT
TCACACCACCCTATCTTTTACTTCTAAAATCTCCCTTTCAGTTTGGCCTC
ATGTTTCCGAAGAGCCACCTCCATCTGGCATTCTAGCAAGTGGCCCTGAT
AAGGGTTATAATCAGACTATATCAGTAGAGCCTGTCAAAGATTGACCTGA
AACAGCACTCCTGGCTTTCCATCTGTCCACATTACATACTGTGACGCCCC
TACCCTTGATATTATAACCCCATTCTTTATTCTCTTCTTTCCGTTTTTCA
TTTCTGCTTTTCCTTGTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTTTGAATGACTCCATTCTTGGACTGTGTTCTGACAACCATACA
TATAGTCAACTATACAGTTTAAAAGAGTAGAATTTACTGGGCAGTGGTGG
CACATGCCTTTCATCCCAGCACTTGGGAGGCAGAGGCAGGTTGACTTCTG
AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCTAGGGCT
ATACTGAGAAACCAAAACACCAAAAAAGGAAAAAAAGAATAGGAAAAATA
GGGTAGAATTTATGATATATGATCTTAATTCCAAAAAGAAGCTGTAATCC
ACTAGCTCACTGAAATGTACTTATTCCAAGTACAACATATTCAGTGCCCT
CTCCTAAAGTAGGGCTGTAGTGAAAAGACGAGGAGCTGCCTGCATTTTCC
AACCCTTGCGAAGACTGAACATAACCTAGCTACTCTTTACTTCTGTTTAT
TTTTCTCACACGTACATTGTATTCAGTTGTTATTCCGTTGCATCACTTGG
AGACTCTGACTCCTGCTCTGCCTTAGTTACTCTTCCTCCTGCCTTTTTCC
TCCTGTTAACCATTCTTCTTGACCTTTATCCCTGCACTATGACTGATCTG
CTCACATCGATTTTTCTGTTTTTGCGCTTCTGCCCCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_k13.b1 MSMg01no418_k13.b1 CHROMAT_FILE:
MSMg01no418_k13.b1 PHD_FILE: MSMg01no418_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:55 2005
         (445 letters)



>mm_chr4_53930945_53931789
          Length = 845

 Score =  789 bits (408), Expect = 0.0
 Identities = 432/444 (97%), Gaps = 7/444 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttctcttttctccatttgttacaaagatcgatgactgagaaatgcatttaagtgaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ccttctcttttctccatttgttacaaagatcgatgactgagaaatgcatttaagtgaaac 537

                                                                       
Query: 61  tgaggaacaaagaagagaaaatggagccgagggaggcacagagcgcctgtgagccccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgaggaacaaagaagagaaaatggagccgagggaggcacagagcgcctgtgagccccttg 477

                                                                       
Query: 121 actgctggtcgtgtacatcgctcatcctcacatctgccgtctgaaggcatccatatatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 actgctggtcgtgtacatcgctcatcctcacatctgccgtctgaaggcatccatatatgt 417

                                                                       
Query: 181 gcgtgtgtctttataagccccatggcttacttagtgaggccatcacaaacagatgggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gcgtgtgtctttataagccccatggcttacttagtgaggccatcacaaacagatgggcag 357

                                                                       
Query: 241 cgaatattatctgcagagtgcagcaggcttatagactgagactggggctctctctctttc 300
           |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 cgaagaataactgcagagtgcagcaggcttatagactgagactggggctctctctctttc 297

                                                                       
Query: 301 tgctggatccattcccctcaattttggagtcattaccctgaggccgggatggaaatacta 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 296 tgctggatccattcccctcaattttggagtcgttaccctgaggccgggatggaaatacta 237

                                                                       
Query: 361 tttcattgagttcacaccaccctatcttttacttctaaaatctccctttcagtttggcct 420
           |||||||||||||||||||||||||||||||||       ||||||||||||||||||||
Sbjct: 236 tttcattgagttcacaccaccctatcttttact-------tctccctttcagtttggcct 184

                                   
Query: 421 catgtttccgaagagccacctcca 444
           ||||||||| ||||||||||||||
Sbjct: 183 catgtttccaaagagccacctcca 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)