BAC Information

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BAC

Clone NameMSMg01-418K24
Chromosome4 (Build37)
Map Location 74,199,631 - 74,200,102
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c, LOC100040258
Downstream geneLOC100039814, LOC636847, 3110001D03Rik, LOC623529, LOC100039833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418K24.T7 (MSMg01no418_k24.b1)MSMg01-418K24.TJ (MSMg01no418_k24.g1)
ACCAG513964AG513965
length755755
length of high quality
(start - end)
446 (74 - 519)483 (75 - 557)
definitionCHROMAT_FILE: MSMg01no418_k24.b1 PHD_FILE: MSMg01no418_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:57 2005CHROMAT_FILE: MSMg01no418_k24.g1 PHD_FILE: MSMg01no418_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCG
GAATTCCTATCCTTTCTCCCTTGGTGATGAACAACAGTATGGAAGTATAA
GCTGAATATACCCTTTCCTCCCCAATGTGCTTCTTGGTCATGATGTTTGC
ACAGTAATAGAAACCCTGACTAAGACAACTCTAAGTTACCATAGATGGAG
AAACCAAGGTATTCCATGACAAAACCAATATTTGTACATTATCTTTCTAG
AAATCCAGCACTTCAAAGGATAATAAAGGGAAAACTCCAACACAAGGAGG
GAAACTACGCCCTAAAAAAAAGCAATATTATAATCTTTCAACAAAACTAA
AAGAAGATAGCCACATGAACCGAACTCAAACTCTAACAATGAAAAAATAA
TATGAAGCAACAATTACTTTTCCTTAATATCTCTTATCATCAATGGACTC
AATTCCCCCAATAAAATGACATAGACTAACATACTGGTTACATAAACAGG
ACCCAATATTTTGCTGCATACAAGAAACCCACCACAGTGACAAAGAGAGA
CACTACATCATAGTATACGGCTGTAAAACAATTTTCCCAGCATATGGTCC
TAATATACAAGCTGGAGTACCCATTCCAATATTGATTAATATTGACTTCC
ACCCTACAGCTATTATAATATCCGGAGGGATATTATTACTTATATAAGGT
CTTTTATATTTTGATGACCTCTCTATTTTGATGTTTCCAATGCTATGCTA
TCTCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
TATTTACGATTTCCCAAAATCTTCTGTGAGTTTCTTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTTTTCAGCCCTGAACAATGAGGAGGCCAAGAAAAGGT
AAGTCAGAAGAAAGAAGATTGTCCTGAGGGACTATATGAATAAAAATGAA
CATATTCATTTCACTCACTTCACAATGTAGTCCTTAGTTCACATCTTCAC
ACCCGTCAGTCAAAGCTCAACCAGAAGGACTACAGGGCTACAAGGCCACA
TGCTAGGGACCTGGTGTTTATGTTTTTCATTTGAGGGCATGGGTACAGTT
AAATACAAGATCAGCTTGGTTAGCAGGTGCTTGGGAAGCAATTGTTCAAG
TTGGCAGAGTCCAGCTGGATATCATATGGTGTTTATCCTTGGATGTCACA
ACAGAGGCTCATTATAGGAACAGTACTTGGCCAAACAAACACTCACAGGA
AAGGCAAACCAGACTCATCTGGCCTTGGCCTTTGGAAAAGCACAGAGGGC
TGCTAATGTTTGCAGCCAGGGAGCTGCATGGTTATTTAAATGTCTCTCAG
AGAGAAACTTGGTTGAGTACTAAAGGTCATGGACCATGGTTTGATGAAGT
TTCCTTGTCACTATCTTTTTTAACCGGGGACATAATAGAGACCTTCTTAT
GGGCTGGCCGCCCCCCCGAAATGTGAACTTAAAGTCCTGGGGCGTTCTCT
TTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_k24.g1 MSMg01no418_k24.g1 CHROMAT_FILE:
MSMg01no418_k24.g1 PHD_FILE: MSMg01no418_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:57 2005
         (483 letters)



>mm_chr4_74199420_74200302
          Length = 883

 Score =  890 bits (460), Expect = 0.0
 Identities = 469/472 (99%)
 Strand = Plus / Plus

                                                                       
Query: 12  tgtgtgtgtgtgtgtgtgtgtgtgtgtgttttcagccctgaacaatgaggaggccaagaa 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tgtgtgtgtgtgtgtgtgtgtgtgtgtgttttcagccctgaacaatgaggaggccaagaa 271

                                                                       
Query: 72  aaggtaagtcagaagaaagaagattgtcctgagggactatatgaataaaaatgaacatat 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaggtaagtcagaagaaagaagattgtcctgagggactatatgaataaaaatgaacatat 331

                                                                       
Query: 132 tcatttcactcacttcacaatgtagtccttagttcacatcttcacacccgtcagtcaaag 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tcatttcactcacttcacaatgtagtccttagttcacatcttcacacccgtcagtcaaag 391

                                                                       
Query: 192 ctcaaccagaaggactacagggctacaaggccacatgctagggacctggtgtttatgttt 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 392 ctcaaccagaaggactacagggctacaaggccacatgctagggacctggtgtttatgtta 451

                                                                       
Query: 252 ttcatttgagggcatgggtacagttaaatacaagatcagcttggttagcaggtgcttggg 311
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ctcatttgagggcatgggtacagttaaatacaagatcagcttggttagcaggtgcttggg 511

                                                                       
Query: 312 aagcaattgttcaagttggcagagtccagctggatatcatatggtgtttatccttggatg 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aagcaattgttcaagttggcagagtccagctggatatcatatggtgtttatccttggatg 571

                                                                       
Query: 372 tcacaacagaggctcattataggaacagtacttggccaaacaaacactcacaggaaaggc 431
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 572 tcacaacagaggctcattataggaacagtacttggccaaacaaacactcataggaaaggc 631

                                                               
Query: 432 aaaccagactcatctggccttggcctttggaaaagcacagagggctgctaat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aaaccagactcatctggccttggcctttggaaaagcacagagggctgctaat 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)