TCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTACCCATCCCCTGTTAAAAAGGCTTCCTGAAATAATGCTAA
TCCTTGAATACCTTATATTTTGAATGACACATCTGGAAAGACAATAAATT
AACAGTAAAAAGTTCAAATAGAGATACCTGTGAAATGTATTCACAGGAGC
CATAAATGTATCGAGTAAAAACACTGATGGCAGAGATGTGTCATTTCCCT
ATAAGTTGTTAGGGAATCTGCAGAGACCCTGTGACCCACAAAGACCCTTG
CCCCTGCCTGGTGCTAGTTGTGTAATTTTACAGTGATGTAGCTACCTGAG
AGTCACCGATGTTCTTGTGATGCCAGAGCTCACTGGTTCCAGAAACTAGA
TATGTGTGGCATTATCTCTTTTGTCATTGATATTGTATTTAGAGAAAAAA
AAAAAAAGAATTGTTATTGTTTCCCTAGGAAAAGTGGTAAAAATTGGGCA
TGGAACCCAGGACTTCGTGCATGATAGAACTACACCCCACCACATAGATA
CTTAGCAACTTATTTTTTTATGAATTTTATATGTTTTAATGACAATACTT
GTTTTTGTTTGGTGATACTTCATTATTTTACACATAAATTGGCATTTCTC
TTATCTATAATTTTATTTTCTATTTCACTTTAGTTATTAACAATAGTTGT
CTTTGTTTTACCAAAACAGTTATGCCTTATTGATCATATGATTGATTC

GGGGAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAGATTGATGAGAAAA
TCTAAGGCATAGAAGATACCACAGAAGAAATTGATACATAGGTCAAAGAA
AATGACAAATCTAAAAAGGTTCTATCAGAAAACACCCAGGAAATTTGGGA
CACTAACAAGATGAAACCTAAAATAATAGGAACAGAAGGAGAAGACTCCC
AGAACACAGGCCCAGAAAATATCTTCAACAAAATGATAGAAGAAAATTTC
CCTAACCTAAAGAAAGAGATGGATGACTGCAAACATACAAGAAGACTACT
AAACATCAAATAAATTGGGTCAGAAAAGAAAATCCTCCCTCCACATAACA
ACCATAATATTAAATATAAAGAATGAAGAAAGAGTATTAAAAGCTGTAAG
GGGAAGAGACCAAGTAACATATTAAGGATGGAATATCAGAATTGCACCTG
ACTTCTCAACCAAGACTCTAAAAGCCAGAAAGGCCTAGACAAATGTCTTA
TAAACTCTAAGGGAGCACAGATGTCAGCCCTGACTACTATACTAGCAAAC
TCACCATACATAGAGAAACCAAAATATTACATGAAAAATAAAAATTTAAA
CTATATATCTTCCAGAAATCCAGCCCTACAGAGGATGCTAGAAGGAAAAT
TCCAACCCAAAGACAGTAAATACACCCAAGAATCACAGGTATTCATTGTT
CT

Query= MSMg01no418_m06.b1 MSMg01no418_m06.b1 CHROMAT_FILE:
MSMg01no418_m06.b1 PHD_FILE: MSMg01no418_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:03 2005
         (563 letters)



>mm_chr4_39194168_39195129
          Length = 962

 Score =  969 bits (501), Expect = 0.0
 Identities = 546/561 (97%), Gaps = 3/561 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctacccatccc-ctgttaaaaaggcttcctgaaataatgctaatccttgaatac 62
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ggaattctaccca-ccctctgttaaaaaggcttcctgaaataatgctaatccttgaatac 704

                                                                       
Query: 63  cttatattttgaatgacacatctggaaagacaataaattaacagtaaaaagttcaaatag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 703 cttatattttgaatgacacatctggaaagacaataaattaacagtaaaaagttcaaataa 644

                                                                       
Query: 123 agatacctgtgaaatgtattcacaggagccataaatgtatcgagtaaaaacactgatggc 182
           || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 643 aggtacctgtgaaatgtattcacaggagccataaatgtatcaagtaaaaacactgatggc 584

                                                                       
Query: 183 agagatgtgtcatttccctataagttgttagggaatctgcagagaccctgtgacccacaa 242
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agagatgagtcatttccctataagttgttagggaatctgcagagaccctgtgacccacaa 524

                                                                       
Query: 243 agacccttgcccctgcctggtgctagttgtgtaattttacagtgatgtagctacctgaga 302
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 523 agacccttgcccctgcctggtgctagttgtggaattttacagtgatatagctacctgaga 464

                                                                       
Query: 303 gtcaccgatgttcttgtgatgccagagctcactggttccagaaactagatatgtgtggca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 463 gtcaccgatgttcttgtgatgccagagctcactggttccagaaactagatacgtgtggca 404

                                                                       
Query: 363 ttatctcttttgtcattgatattgtatttagagaaaaaaaaaaaaagaattgttattgtt 422
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 403 ttatctcttttgtcattgatattgtatttagag-aaaaaaaaaaaagaattgttattgtt 345

                                                                       
Query: 423 tccctaggaaaagtggtaaaaattgggcatggaacccaggacttcgtgcatgatagaact 482
           |||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 344 tccctaggaaaagttgtaaaaatttggcatgaaacccaggacttcgtgcatgatagaact 285

                                                                       
Query: 483 acaccccaccacatagatacttagcaacttatttttttatgaattttatatgttttaatg 542
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 284 acaccccaccacatagatacttagcaacttatttttttatgaattttaaatgttttaatg 225

                                
Query: 543 acaatacttgtttttgtttgg 563
           |||||||| ||||||||||||
Sbjct: 224 acaatactcgtttttgtttgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 962
Length adjustment: 10
Effective length of query: 553
Effective length of database: 952
Effective search space:   526456
Effective search space used:   526456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)