Query= MSMg01no418_n07.b1 MSMg01no418_n07.b1 CHROMAT_FILE:
MSMg01no418_n07.b1 PHD_FILE: MSMg01no418_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:08 2005
(489 letters)
>mm_chr4_125549877_125550765
Length = 889
Score = 833 bits (431), Expect = 0.0
Identities = 474/489 (96%), Gaps = 3/489 (0%)
Strand = Plus / Plus
Query: 1 tggtgtaaagataagcgaaggcttcatcttccccgctttgaagaacttggaagaattaaa 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtgtaaagataagcgaaggcttcgtcttccccgctttgaagaacttggaagaattaaa 260
Query: 61 ttgtacggtgagaggtgcttctaaccagcctgaatcgtggcgctgtggtctgtatcaccc 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtacagtgagaggtgcttctaaccagcctgaatcgtggcgctgtggtctgtatcaccc 320
Query: 121 tggacagtgccgtgagctctccagcctcagcttcctggtctgttcagtagaaattgatgt 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggacactgccgtgagctctccagcctcagcttcctggtctgttcagtagaaattgatgt 380
Query: 181 caagctgccagggtctttgtgagactatgggatgacactgtggggacacccaggaacaaa 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 caagctgccagggtctttgtgagactatgggatggcactgtggggacacccaggaacaaa 440
Query: 241 cctggctggttctggtgcacagtaagcgaaagcaaaataccgaggtccatggtggtgagg 300
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 cctggctggtgctggtgcacagtaagcgaaagcaaaatgccgaggtccatggtggtgagg 500
Query: 301 aaccttctctcaccatgcacgtgagagcttcatttctctccataaaactcaacacatctc 360
|||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct: 501 aaccttctctcaccatgcacatgagagcttcatttctctccatgaaactcagcacatctc 560
Query: 361 acacactctcatttcgcttcctagtgggtgtgtcatctcccgggtctcccagacccggtg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 acacactctcatttcgcttcctagtgggtgtgtcatctcccgggtctcccagac--ggtg 618
Query: 421 gtctgtagaggaacaaggtttgcatatgctgtgctcaccaacacatagaaagatagcgca 480
| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 619 g-ctgtagaggaacaaggttttcatacactgtgctcaccaacacatagaaagatagcgca 677
Query: 481 agcatttca 489
|||||||||
Sbjct: 678 agcatttca 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_n07.g1 MSMg01no418_n07.g1 CHROMAT_FILE:
MSMg01no418_n07.g1 PHD_FILE: MSMg01no418_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:08 2005
(414 letters)
>mm_chr4_125715157_125715969
Length = 813
Score = 746 bits (386), Expect = 0.0
Identities = 407/414 (98%), Gaps = 1/414 (0%)
Strand = Plus / Minus
Query: 1 agtttatggctctcagaggcagagactgggtttgaatccagttctagctgctgtctgatt 60
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 613 agtttatggctcccagaggcagagcctgggtttgaatccagttctagctgctgtctgatt 554
Query: 61 tttgccacatctggttttatccgacttggtgtctggtttcagccactcaccctctgaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tttgccacatctggttttatccgacttggtgtctggtttcagccactcaccctctgaata 494
Query: 121 cttggttcaattctttcagatgtgaccctggatttctgttggggctatggattgattctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cttggttcaattctttcagatgtgaccctggatttctgttggggctatggattgattctg 434
Query: 181 tgaaactgactccaaccccgattttctccagttcacagctccctgtcttctaccccacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaaactgactccaaccccgattttctccagttcacagctccctgtcttctaccccacct 374
Query: 241 tctgtctcatctttggggagtccactgtgagccatgatggaaaacacccgcctcagaggc 300
|||| | || |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 373 tctg-cccagctttggggagtccactgtgagccatgatggaaaacacccgactcagaggc 315
Query: 301 cagaagtaaaagagtgtgtttattcccatactccccattgctacagcccagatagggaga 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 314 cagaagtaaaagagtgtgtttattcccatactccccattgctagagcccagatagggaga 255
Query: 361 gaggagaggattttgggaacactgtgggtagacaaacctctctctccagcgaag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gaggagaggattttgggaacactgtgggtagacaaacctctctctccagcgaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 813
Length adjustment: 9
Effective length of query: 405
Effective length of database: 804
Effective search space: 325620
Effective search space used: 325620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
