BAC Information

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BAC

Clone NameMSMg01-419A17
Chromosome4 (Build37)
Map Location 125,910,720 - 125,911,196
singlet/doubletsinglet
Overlap geneMtap7d1
Upstream geneLOC100039298, Grik3, Ftl2, Csf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3
Downstream geneTrappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320, Sfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419A17.T7 (MSMg01no419_a17.b1)MSMg01-419A17.TJ (MSMg01no419_a17.g1)
ACCAG514238AG514239
length703708
length of high quality
(start - end)		---477 (73 - 549)
definitionCHROMAT_FILE: MSMg01no419_a17.b1 PHD_FILE: MSMg01no419_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:25 2005CHROMAT_FILE: MSMg01no419_a17.g1 PHD_FILE: MSMg01no419_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATATATTCTCTCTCTCCNTNGNGCNNATTATCGAGATAGCGNANTNTNG
TTTTTTCAGATATTACTTTTTAGAGTATAGTGTTATATTATAAAGGGGTG
ATGATATCATCAGAATTATTATATTTTTGAAGTATGATGACAACTGATGC
CCCACTGTTGTTATCAGTACTGTGCCAACAAGAAGAAAATAATTAGTACA
CAACTGCGTCACTGTTGACCCCCAAAGAATCATATTCCATCATTATGATG
ATCTTCTATTAAACACCATTTTTTGCTATATCATCCAGCAACGAGAAAAA
CATTTTCTTGTTTTTTTATACACACTGTGTGTTCTCTATACATCAGGTTT
TCTCTCCACGTGATTCTTCCTTAACAAGCTGTGTCTCTCTCCTTGTACAC
GCCCCCCCCAACTCTGAGCTAGATATCTGTCATATATACCCCCATAACAC
AGTGCTCCCCCCGCTGTGTGGTGTGTAATACTCTAATACAACACAGTGTT
GTGCTCTGTGTCTTCTACAAGAGGGATATACAGAATTGTTACCCTCCCCT
GTGTTCTCTCTGCGCCTACTCTAACTCACGAGGAGTATACCACTACCCCT
CTCACTGTTTTCAAAAAGCACCCCCACAACACCTTTTATCACCCTATATC
TTTTTTTGTATTTGTGATCCCCCCTCTTTATACCCCTTAATTATTATTCT
CTG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTTTTGGCCCAGACACAGAAGAGCCTC
CCTCACTGTATCCTTCCTCGGCTCTGGAGGCTTCTCTGCAGCCTCCTTTC
CTCACCCCAACTCCCGCTCCCCAACCTGAGAATCCTGACCTTGGTTTCAG
CGGCTTCTGACTTCCGAGTCCTCTTCATTATCTCCTCCAGCCGCTGTTGG
AGGAGGCCCCACATCAGTTAGGCTCAAACCCAGACCTAGTCCTCAACTTC
CCACCTGCTGGCCCTATTCTAGAGCTCAGTTCCCTCCCAACCCACACCCG
TCCTTCCTTATCCGATCTTCTACAAATCCAAGCCTGGGCCCTACTGGTTC
ACAGGTACAATTAATTTCCAAGAACTGGAGCTGGAGCCAGGCCCCGCCCC
GGCAAGGCCCCGCCCCCAGGTCCCATCTGCCCTGGACACCTTTCTTCGCT
CTTGTCTCTCCTGTTCCTCCTTCTGAAAGTGCTTTTCCCGCTCCTGGCGC
TGGCGCTCAGCTTCTTCCCGGGACCGGGCTTCGGTTTCCTCTTTCTGCCA
AGGCCTCCCAAAAGTTTCGGACTCTCTGCTTTCAGCCTTCCCCTCCCAGG
TAAGCCCACCGAATGCCAGCCCAAAATTGCCCCGCCCCCCTGTGCAACTG
GTTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_a17.g1 MSMg01no419_a17.g1 CHROMAT_FILE:
MSMg01no419_a17.g1 PHD_FILE: MSMg01no419_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:25 2005
         (477 letters)



>mm_chr4_125910520_125911396
          Length = 877

 Score =  899 bits (465), Expect = 0.0
 Identities = 474/477 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttttggcccagacacagaagagcctccctcactgtatccttcctcggctctggaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttttggcccagacacagaagagcctccctcactgtatccttcctcggctctggaggct 260

                                                                       
Query: 61  tctctgcagcctcctttcctcaccccaactcccgctccccaacctgagaatcctgacctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctgcagcctcctttcctcaccccaactcccgctccccaacctgagaatcctgacctt 320

                                                                       
Query: 121 ggtttcagcggcttctgacttccgagtcctcttcattatctcctccagccgctgttggag 180
           |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtttcggcggcttctgatttccgagtcctcttcattatctcctccagccgctgttggag 380

                                                                       
Query: 181 gaggccccacatcagttaggctcaaacccagacctagtcctcaacttcccacctgctggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggccccacatcagttaggctcaaacccagacctagtcctcaacttcccacctgctggc 440

                                                                       
Query: 241 cctattctagagctcagttccctcccaacccacacccgtccttccttatccgatcttcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctattctagagctcagttccctcccaacccacacccgtccttccttatccgatcttcta 500

                                                                       
Query: 301 caaatccaagcctgggccctactggttcacaggtacaattaatttccaagaactggagct 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaatccaagcctgggccccactggttcacaggtacaattaatttccaagaactggagct 560

                                                                       
Query: 361 ggagccaggccccgccccggcaaggccccgcccccaggtcccatctgccctggacacctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagccaggccccgccccggcaaggccccgcccccaggtcccatctgccctggacacctt 620

                                                                    
Query: 421 tcttcgctcttgtctctcctgttcctccttctgaaagtgcttttcccgctcctggcg 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttcgctcttgtctctcctgttcctccttctgaaagtgcttttcccgctcctggcg 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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