Query= MSMg01no419_b23.b1 MSMg01no419_b23.b1 CHROMAT_FILE:
MSMg01no419_b23.b1 PHD_FILE: MSMg01no419_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:31 2005
(380 letters)
>mm_chr4_85163542_85164321
Length = 780
Score = 696 bits (360), Expect = 0.0
Identities = 375/384 (97%), Gaps = 8/384 (2%)
Strand = Plus / Minus
Query: 1 agctgctctagaacactgtgaagcctgagttcttagaaagttggacatcacctatggtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agctgctctagaacactgtgaagcctgagttcttagaaagttggacatcacctatggtct 521
Query: 61 aagtcaaccattaagctgctaacacttatgaggaaaacagataaaactgaacgtctgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aagtcaaccattaagctgctaacacttatgaggaaaacagataaaactgaacgtctgtgt 461
Query: 121 taagttgagtgcacaagtgtttagaggaacttgtatttataacggccatgagagaagatg 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 460 taagttgagtgcacaagtgttcagaggaacttgtatttataacggccatgagagaagatg 401
Query: 181 cacaggctctccatatgtgcgagccactacacaacaaactgcttgacaaacacccaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cacaggctctccatatgtgcgagccactacacaacaaactgcttgacaaacacccaggaa 341
Query: 241 c----ttttaggcacaacatcactgcttcctgctacagcacgaatgatctcaattatgtt 296
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 caaaa----aggcacaacatcactgcttcctgctacagcacgaatgatctcaattatgtt 285
Query: 297 gagttaaaaaacaaacaaacaaacaaaaaacaccctaagtgataagagtgtatcatgcca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gagttaaaaaacaaacaaacaaacaaaaaacaccctaagtgataagagtgtatcatgcca 225
Query: 357 ctgacagaaaacactaggaagtgt 380
||||||||||||||||||||||||
Sbjct: 224 ctgacagaaaacactaggaagtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space: 286041
Effective search space used: 286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_b23.g1 MSMg01no419_b23.g1 CHROMAT_FILE:
MSMg01no419_b23.g1 PHD_FILE: MSMg01no419_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:31 2005
(440 letters)
>mm_chr4_84965374_84966212
Length = 839
Score = 810 bits (419), Expect = 0.0
Identities = 434/439 (98%), Gaps = 1/439 (0%)
Strand = Plus / Plus
Query: 1 tctctgtagaccagggtgacctagaactcagatcctcctgtctctgcctcctctctgctg 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctgtagaccagggtgacctagagctcagatcctcctgtctctgcctcctctctgctg 260
Query: 61 ggattaaaggcgtgcaccaccaccagctgtctctaaaacacttttcataaggaaactgga 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ggattaaaggcgtgcaccaccaccagctgtctctaaaacactttttataaggaaactgga 320
Query: 121 ggtgtttctgagatcaattaattgtgagattattgctcacattctcacggtatactcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgtttctgagatcaattaattgtgagattattgctcacattctcacggtatactcttt 380
Query: 181 gatttgattttttttaaaatgagtgtgattatgcatttagattaacatgtgcatttagat 240
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gatttgatttttttt-aaatgagtgtgattatgcatctagattaacatgtgcatttagat 439
Query: 241 agtttaccaacattcttttgaaaagtaatttaataaaatgtctggagatctagagtgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agtttaccaacattcttttgaaaagtaatttaataaaatgtctggagatctagagtgaaa 499
Query: 301 gactcatcagaacacactgagcaatttcaaaataattttgttgagtataaataatatttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gactcatcagaacacactgagcaatttcaaaataattttgttgagtataaataatatttc 559
Query: 361 gaatattattttaaatagcttagtactggagcacatgagagtttgccccctttattctga 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaatattattttaaatagcttagtactggagcacatgagagtttgccccctttattctga 619
Query: 421 agtgacgctggtgaagttt 439
|||||||||||||||||||
Sbjct: 620 agtgacgctggtgaagttt 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 839
Length adjustment: 9
Effective length of query: 431
Effective length of database: 830
Effective search space: 357730
Effective search space used: 357730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
