BAC Information

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BAC

Clone NameMSMg01-420D06
Chromosome4 (Build37)
Map Location 47,715,329 - 47,715,815
singlet/doubletsinglet
Overlap genenone
Upstream geneGabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
Downstream geneLOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420D06.T7 (MSMg01no420_d06.b1)MSMg01-420D06.TJ (MSMg01no420_d06.g1)
ACCAG515124AG515125
length691751
length of high quality
(start - end)		---487 (72 - 558)
definitionCHROMAT_FILE: MSMg01no420_d06.b1 PHD_FILE: MSMg01no420_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:58 2005CHROMAT_FILE: MSMg01no420_d06.g1 PHD_FILE: MSMg01no420_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCAAAATTGGGCGCCGAAGATCCTAATTCTACAAGGGGGANNCCCNCT
GTTACTCAGCGAGAGANGANGCGCCACCACATTCCCCNCNNAAAAAATTA
AACCACGCCCCCTGAGACNTCAGGGAGATTGAGACAGCTTTGTATCCACA
GAAGAACAGGGAGAATCTTACTCCCCGATGATTACCCACAGAACGAGGCT
AAAAGTTGGGTGGTGATTCGGCAACACTATTTGTATGCAGCTGCTTGTCG
CACGCCTCAGTCTCCCCATTTGTAGATGGGGAATTAAGAAAGTGTTTTTT
TTTGTGAAAGAGTTTAGGGGATATACCCATTCTGTTTTTGGCACCTAAAG
GGTGCGACATGGGGGAAAGGAAAGTGATGTCCGTGCTCACTAGAAAAAGA
CAATTTTTCGTGCCAGTCATGTGTTGTGACCACTATAACACAGAGCTGAG
GTGTTTTGGTATTATATAAAGATATCTGAGAATCACGCGCCAAGAGAACA
TTGGCCCACCCCACCCCCCTTTTGGCAAATTGGCATAGCTTTTAAGGAAA
GGAATTAATCATAAAAATCAATCGCTCTCACTCCCCCTTTTCCCCTCATT
TTCCGCGGGTGTGGGCGAGTGTGTCTCTCTCTCTGACTTGCGTGCTCATA
CATCCACTTAAAGTTTAACGACCGAGCTATAAATCCGCAGN

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAAGGCTGAAAGGAATCCCATAGGTCTA
CAGTCAAGGTTCTTGGGGGGCTAGATCTCTGGGGGACCTTACCTCTTCCA
TCAGTTGGATGCTTCCCCAGTCTGTGCCTGTGGCCCGACATTGCACCATG
TCTTCTCGCTGTGTTTCATCCGTCTGTGGCTGGTCATCCTGTCTCTTATA
AAGGGACTTCACACTCACATTAGAGACCTACTACATAATGCAGGATGTAC
ACCTCACCTACAGATTCAGAATCATATTGGTAAACTTCTTTACCATATAA
GGTCACATTTACAAATTACAGAAACTTATATATAGGTAGTTATGGAGACT
TTCATTCAGCCTACTTCAGTCTACTTTGCATATTCATTTAATTGCTTATG
TGCCTTTTCTGTCTTCATCATTCACAAAACAGAGCTTCCTTATATGGAAG
CAAAAGTTAACCAAACTAACTAACTCATCTGTCTCATTCTTTTCTGTGTC
TGGGGATGGGTTGGGGTCAGGTGATGTAAGACTTAACCTATAATCGAAGA
TTTATTTACTTTGGTTAACCTGTGTTTGCCCCTTGTTATAATCTCCCTGC
GTAGTCAAACTCTTTCTAAAGACGTTTCCCTGTGTCTATTTTATCCTGTG
GTCCTTGCCCTGTTTTATTATACTTTCTTGATTCCACATCTTATATCTTA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_d06.g1 MSMg01no420_d06.g1 CHROMAT_FILE:
MSMg01no420_d06.g1 PHD_FILE: MSMg01no420_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:58 2005
         (487 letters)



>mm_chr4_47715129_47716015
          Length = 887

 Score =  926 bits (479), Expect = 0.0
 Identities = 485/487 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaggctgaaaggaatcccataggtctacagtcaaggttcttggggggctagatctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 687 agaaggctgaaaggaatcccataggtctacagtcaaggttcttggggggctagatctttg 628

                                                                       
Query: 61  ggggaccttacctcttccatcagttggatgcttccccagtctgtgcctgtggcccgacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggggaccttacctcttccatcagttggatgcttccccagtctgtgcctgtggcccgacat 568

                                                                       
Query: 121 tgcaccatgtcttctcgctgtgtttcatccgtctgtggctggtcatcctgtctcttataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgcaccatgtcttctcgctgtgtttcatccgtctgtggctggtcatcctgtctcttataa 508

                                                                       
Query: 181 agggacttcacactcacattagagacctactacataatgcaggatgtacacctcacctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agggacttcacactcacattagagacctactacataatgcaggatgtacacctcacctac 448

                                                                       
Query: 241 agattcagaatcatattggtaaacttctttaccatataaggtcacatttacaaattacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agattcagaatcatattggtaaacttctttaccatataaggtcacatttacaaattacag 388

                                                                       
Query: 301 aaacttatatataggtagttatggagactttcattcagcctacttcagtctactttgcat 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaacttagatataggtagttatggagactttcattcagcctacttcagtctactttgcat 328

                                                                       
Query: 361 attcatttaattgcttatgtgccttttctgtcttcatcattcacaaaacagagcttcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 attcatttaattgcttatgtgccttttctgtcttcatcattcacaaaacagagcttcctt 268

                                                                       
Query: 421 atatggaagcaaaagttaaccaaactaactaactcatctgtctcattcttttctgtgtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atatggaagcaaaagttaaccaaactaactaactcatctgtctcattcttttctgtgtct 208

                  
Query: 481 ggggatg 487
           |||||||
Sbjct: 207 ggggatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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