NTCTATAATTTGTTGCCGCTGATAAGATGATTATAACTACAAGCACAGCG
GAGGNATTCGTTTTTCTACTCAAACCCTCATCTGATGAGAGGATTAGATG
ATCTGCAGGCAACCACTCCGTTGACTTCATTATAATGTAGAATATTACCC
CCTGAGCTGAATTATAATAAGTGAAGATTCCTTCCCGATGGTGGCGGTCT
TGTTGTCTTAATGACGGCGTCTGTTGTCCTGAAGAAGTGTTGCAGCATCA
TGACGTCCCAGTTGGCCCCCCCCCATACTAAAGAAGAAACCGCTGCTGGA
CTAATCAAGAAATCTTCTCTTGTTTTCACAACGAGGAAGGGCCCCACTAC
CTTCTCCCCAATAAACATCAGCGCCGCTGGGATTATGTGGTGCTCCTTAC
TTCACATAGATATGACCTTACTACAAGGAGATAGGAATGGATCAATTTGC
CTTCTTCTACATGATAACCGGCTGTTGTGCCAGCACCATTTGTTGAAGAT
GCTGTCTTTTTTTCCACTGGATGGTTATATCTCCCGTGTCAAAAGATCAA
GTGACCATAGATGTGTGGGCTCATCTCAGACTCTTCAACTCTATTCCAGT
GGTCCACTTGTCTGTCACTATACCAGAACCATGCAGNTTTTATCACAATT
GCTCTGTGGTAAACCTTTAGGCCAGCCAGGGGGATTCCACCACAGGTCCT
TTTATCCTTGAGAAGAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTCGTTGGTGGGGAATAATTGCAATCCCTGATCCC
CATCACGAATGGGGTTCAATGGGTTACCCGCGCCTGCCGGGCATAGTGTA
GGCACATGCTGAGCCAGTCAGTGTATCTCGCGTGCAGCCCTGGACATCTA
AGGGCATCACAGACCTGTTATTGCTCAATCTCAGGTGGCTGAACACCACT
TGTCCCTCTAAGAAGTTGGGGGACGCCGACTGCTCGGGGGTTACATAACT
AGTTATTATGCCAGAGTCTCTTTCGTTATCTTAATTAACCAGACAACTTG
CTCTGCCAACTAAGAACAGCCTTACCCCACCAACCACGGAATCGAGAAAG
AGCTATCATTCTGTCAATCCTGTCCATGTCCAGGCCGCGTGAGGTTTACC
TCAAAGGGAAGCCTTTCCCCACCAATCACTAATTAATAAAATGCATTATC
TCTGATTTTTTTTCCTTTTATTCTTTTCTCAAACATCACACCCTCACCAA
ACGTTCTTCTCTTTCCATCCCTCCAAGTCCTTTGTCCCACTTTGCATCTC
CCCCAAATTTAGACTCATTCTTCATCTCTTTATCTTANNAAGAGAGAGAG
ATAGAAGAACNGGAGAGAGAGAGAGAGATTGAAGAAGGGNAGAAAGGGAA
GAAGGGAAGAAAGAAAGAAAGAAAGAAAGAANAGGGGAGAGGAAAGAAAG
TCTCTG

Query= MSMg01no420_d13.g1 MSMg01no420_d13.g1 CHROMAT_FILE:
MSMg01no420_d13.g1 PHD_FILE: MSMg01no420_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:59 2005
         (615 letters)



>mm_chr4_78419198_78420212
          Length = 1015

 Score = 1052 bits (544), Expect = 0.0
 Identities = 588/613 (95%), Gaps = 16/613 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcgttggtggggaataattgcaatccctgatccccatcacgaatggggttcaatgggtt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 748 ctcgttggtggggaataattgcaatccccgatccccatcacgaatggggttcaatgggtt 689

                                                                       
Query: 61  acccgcgcctgccgggcatagtgtaggcacatgctgagccagtcagtgtatctcgcgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 acccgcgcctgccgggcatagtgtaggcacatgctgagccagtcagtgtatctcgcgtgc 629

                                                                       
Query: 121 agccctggacatctaagggcatcacagacctgttattgctcaatctcaggtggctgaaca 180
           |||||||||||||||||||||||||||||||||||||||||               ||| 
Sbjct: 628 agccctggacatctaagggcatcacagacctgttattgctc---------------aacg 584

                                                                       
Query: 181 ccacttgtccctctaagaagttgggggacgccgactgctcgggggttacataactagtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 583 ccacttgtccctctaagaagttgggggacgccgactgctcgggggttgcataactagtta 524

                                                                       
Query: 241 ttatgccagagtctctttcgttatcttaattaaccagacaacttgctctgccaactaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ttatgccagagtctctttcgttatcttaattaaccagacaacttgctctgccaactaaga 464

                                                                       
Query: 301 acagccttaccccaccaaccacggaatcgagaaagagctatcattctgtcaatcctgtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 acagccttaccccaccaaccacggaatcgagaaagagctatcattctgtcaatcctgtcc 404

                                                                       
Query: 361 atgtccaggccgcgtgaggtttacctcaaagggaagcctttccccaccaatcactaatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atgtccaggccgcgtgaggtttacctcaaagggaagcctttccccaccaatcactaatta 344

                                                                       
Query: 421 ataaaatgcattatctctgattttttttccttttattcttttctcaaacatcacaccctc 480
           ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct: 343 ataaaatgcattatctctgattttttt-ccttttattcttttctcatacatcacatcctc 285

                                                                       
Query: 481 accaaacgttcttctctttccatccctccaagtcctttgtcccactttgcatctccccca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 accaaacgttcttctctttccatccctccaagtcctttgtcccactttgcatctccccca 225

                                                                       
Query: 541 aatttagactcattcttcatctctttatcttannaagagagagagatagaagaacnggag 600
           ||||||||||||||||||||||||||||||||  |||| |||||||||||||||| ||||
Sbjct: 224 aatttagactcattcttcatctctttatcttaaaaagaaagagagatagaagaacaggag 165

                        
Query: 601 agagagagagaga 613
           |||||||||||||
Sbjct: 164 agagagagagaga 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)