BAC Information

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BAC

Clone NameMSMg01-420H10
Chromosome4 (Build37)
Map Location 13,558,418 - 13,558,754
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000004461, LOC100039988
Downstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420H10.T7 (MSMg01no420_h10.b1)MSMg01-420H10.TJ (MSMg01no420_h10.g1)
ACCAG515323AG515324
length748731
length of high quality
(start - end)		---498 (71 - 568)
definitionCHROMAT_FILE: MSMg01no420_h10.b1 PHD_FILE: MSMg01no420_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:19 2005CHROMAT_FILE: MSMg01no420_h10.g1 PHD_FILE: MSMg01no420_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATCAAAATTGCGGCGCAAAAGAATATATTCCCAAAGGGGGGNNGGA
ANCTTNCTTTCAAAAAGGAAGGANNGAGGGANAANAGAAACACCAAGGGC
CCCGGATGAACCATCACTTTTGAAAAACGTGTTGGGAAGGTTTTAAAGAC
ACCCCAAGGGGGAGGAAATGGGCCCAAAAAGGGAAGGAACCCTTAACGGA
GGGGGTCCCGGATTATAAAAACGAACCCCCCGGGGGCTGTGGGCCCCCCA
AAAAAAGGGCTTTCCTTAAAAAAAGGGGGCGGGGCCTCCTTTACCGGGGC
TTTTTTTTTGTAAGCAACCCCCATTTTTGGGCAGGGGGGCGCACGTTTGC
TTCTCAAACGGTGCCCCCCCTTTAAGGACGCCGGGGGTGACCTTTGTCCC
GTTAGTAACACCCCATTTAATGGGTGGGACGCCTTAGCGACCCCCCCACA
GCGGGGCAGCGAAAGAGATGTTTTCTCCCAAAAAATAGTGCCCGAACATA
GACCCCACCTTCCCTCCTTATACGCGAACTTCTTGGGAAGGGGTTTTTTA
TTTAACGGAGTCATAAAACCACCTTCCTAGCGGCTGCCATGGTAGGACTG
AAAAAACCTTTTTTGCCTGTGTTCTTCCCCCCTTGTCTCGCCGAAGCTGA
ACACATAGATCGTATTTTCAGCTATTAACGCTATACCCATTCTACTAACA
AGCCGGGTACGGTTTACTAACCCCCCCAGCAAAAAATTGGCGCGAAAN

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATGTTTATTCGTAGTTTCTCTTTTACAGC
TATGTTTTCCAAATCATTTCCAGAAAGACTATGAAAATGCTCCCAGAGTT
TTAGTCATAGGAATGGAGTGATCTGTTAAGTCTGATGGATAAGACCCCTA
TTGACTAAGGGTTTCTAATTTTTGACATGAAACACCAAGGCTAAAAAGCA
AGTTGGGCTGGAAAGGGTTTATATGGCTTATACTTCCATATTGCTGTTCA
TCGTCTAAGAAAGTCATTACAGGAACTCAAGCAGGGCAGGAACCTGGAGG
AAGAGCTGAGGCAGAGGCCATGGAGGGGTGCTTCTTACTGATTTGCCTTC
CACGGATTGCTCAGCATTCTTTTTAGTAGTATCTAGGACTGCCAGGGCAG
GGATGGAACCATCTTCAATATCCTGGTCCCTCCCACATTGATCAGTAATT
AAGAAACTGCCTTACAGTTACTGATCTTTAGGAGGTATCTTCATAATTGA
AGTGCCCTTCTTTCAGACAACTCTAGTTTGTGTGCCAACTTGACATAAGA
CTAGNCAGNCTACCTGCTCTCAGATAANTGATATTTAAGACTACAAAAGA
GCTTATAGATTAAAATGAATTCCTTTGTAGAGGGTGCTGTGTTTTAATCT
GGACCAGAATGTTTTGACCATTTATAATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_h10.g1 MSMg01no420_h10.g1 CHROMAT_FILE:
MSMg01no420_h10.g1 PHD_FILE: MSMg01no420_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:19 2005
         (498 letters)



>mm_chr4_13558418_13559315
          Length = 898

 Score =  605 bits (313), Expect = e-177
 Identities = 331/337 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   tgtttattcgtagtttctcttttacagctatgttttccaaatcatttccagaaagactat 62
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgtttatttgtagtttctcttttacagctatgttttccaaatcatttccagaaagactat 278

                                                                       
Query: 63  gaaaatgctcccagagttttagtcataggaatggagtgatctgttaagtctgatggataa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gaaaatgctcccagagttttagtcataggaatggagtgatctgttaagtctgatggataa 218

                                                                       
Query: 123 gacccctattgactaagggtttctaatttttgacatgaaacaccaaggctaaaaagcaag 182
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gacccctattgactaaaggtttctaatttttgacatgaaacaccaaggctaaaaagcaag 158

                                                                       
Query: 183 ttgggctggaaagggtttatatggcttatacttccatattgctgttcatcgtctaagaaa 242
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 157 ttgggctggaaagggtttatatggtttatacttccatattgctgttcatcgtctaagaaa 98

                                                                       
Query: 243 gtcattacaggaactcaagcagggcaggaacctggaggaagagctgaggcagaggccatg 302
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 97  gtcattacaggaactcaagcagggcaggaacctggaggaagagctgagacagaggccatg 38

                                                
Query: 303 gaggggtgcttcttactgatttgccttccacggattg 339
           ||||||| |||| ||||||||||||||||||||||||
Sbjct: 37  gaggggtccttcctactgatttgccttccacggattg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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