Query= MSMg01no421_b10.b1 MSMg01no421_b10.b1 CHROMAT_FILE:
MSMg01no421_b10.b1 PHD_FILE: MSMg01no421_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:07 2005
(433 letters)
>mm_chr4_40287852_40288684
Length = 833
Score = 698 bits (361), Expect = 0.0
Identities = 425/471 (90%), Gaps = 38/471 (8%)
Strand = Plus / Plus
Query: 1 gtagttggagatattgcatattgacaatgacttccacaaagtcatttatttttttctcct 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gtagttggagatagtgcatattgacaatgacttccacaaagtcatttatttttttctcct 222
Query: 61 gggtccatactacagccactcataagtacaggatgtctatgttgcttccttcttactagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gggtccatactacagccactcataagtacaggatgtctatgttgcttccttcttactagt 282
Query: 121 ctgatatgtgtagaagtaatgatgtcacttctagtccaaagtatagctttatgtcactta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctgatatgtgtagaagtaatgatgtcacttctagtccaaagtatagctttatgtcactta 342
Query: 181 agtatgaggtcatgttcaaagaagtattgctgtgttaacacaataaaatgttcttacacg 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 343 agtatgaggtcatgttcaaagaagtgttgctgtgttaacacaataaaatgttcttacacg 402
Query: 241 atccctccatatgatctcttgatttaaagagggaggagagagagagagagagagagagag 300
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atccctccctatgacctcttgatttaaagagggaggagagagagagagagagagagagag 462
Query: 301 agagaga--------------------------------------aggtaaaaacaagct 322
||||||| |||||||||||||||
Sbjct: 463 agagagagagagagagagagagagagagagagagagagagagagaaggtaaaaacaagct 522
Query: 323 agacgaagatattaccatcatcttgacaacttagaattacctgggaatgaagccaactgg 382
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 523 agacaaagatattaccatcatcttgacaacttagaattacctgggaatgaagtcaactga 582
Query: 383 catactttgtaaattaggctgtggacacttctgaaggggattgtcttgatt 433
||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 catacttcgtaaattaggctgtggacacttctgaaggggattgtcttgatt 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space: 349376
Effective search space used: 349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_b10.g1 MSMg01no421_b10.g1 CHROMAT_FILE:
MSMg01no421_b10.g1 PHD_FILE: MSMg01no421_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:07 2005
(498 letters)
>mm_chr4_40424118_40425016
Length = 899
Score = 920 bits (476), Expect = 0.0
Identities = 494/500 (98%), Gaps = 3/500 (0%)
Strand = Plus / Minus
Query: 1 actctccgtttctgtttgtcaactcagtggatgttaagatccataatactgaaaacattt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 699 actctccgtttctgtttgtcaactcagtggatgttaagatccataatattgaaaacattt 640
Query: 61 cggaggagttgataagcagagttggaggagaaccggaagctaactgtatctgggacccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cggaggagttgataagcagagttggaggagaaccggaagctaactgtatctgggacccct 580
Query: 121 -cccccaagctgactgcaatagagagtaaatgttgaaacagttgtctaatgtgctccagc 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ccccccaagctgactgcaatagagagtaaatgttgaaacagttgtctaatgtgctccagc 520
Query: 180 tcgggtgtcttggctgaattcacatttaggaatcaagaaagaggcagatgggaaaagaac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tcgggtgtcttggctgaattcacatttaggaatcaagaaagaggcagatgggaaaagaac 460
Query: 240 ctggggtcctaacgagtaggaatacagagcaagggaaactgaatagagaaatttccaaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ctggggtcctaacgagtaggaatacagagcaagggaaactgaatagagaaatttccaaag 400
Query: 300 taaaaaacctatttaacatcaatcggaaatgactggatgaatagtcaagacaggaaaacc 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 399 taaaaaacctatttaacatcaatcagaaatgactggatgaatagtcaagacaggaaaacc 340
Query: 360 agcacctgtttcgcttattatcagggagttcttaaaggcttccaggagcaagccctttgc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agcacctgtttcgcttattatcagggagttcttaaaggcttccaggagcaagccctttgc 280
Query: 420 ttcttgtgttaacattagtaatttcctgaggctgttggctctgccccctttcttctgcct 479
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 279 ttcttgtgttaacattagtaatttcctgaggctgttggctttgccccctttcttctgcct 220
Query: 480 ctattt-aanaaaaaagaaa 498
|||||| || ||||||||||
Sbjct: 219 ctattttaa-aaaaaagaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 899
Length adjustment: 10
Effective length of query: 488
Effective length of database: 889
Effective search space: 433832
Effective search space used: 433832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
