Query= MSMg01no422_j15.b1 MSMg01no422_j15.b1 CHROMAT_FILE:
MSMg01no422_j15.b1 PHD_FILE: MSMg01no422_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:05 2005
(452 letters)
>mm_chr4_30426262_30427114
Length = 853
Score = 818 bits (423), Expect = 0.0
Identities = 441/447 (98%), Gaps = 1/447 (0%)
Strand = Plus / Plus
Query: 7 gaattccttgccctacgcttcctgcaagccactaactgccatctctggaaccacttctct 66
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccttgccctaagcttcctgcaagccactaactgccatctctggaaccacttctct 266
Query: 67 cctgcagcagcttcgctgaggttagttttctcaaaggtgtttttacaaagtcctcctctc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cctgcagcagcttcgctgaggttagttttctcaaaggtgtttttacaaagtcctcctctc 326
Query: 127 atattatttttccttcatgtctctactgactctgaggataactttgcatatcccaaatct 186
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atattacttttccttcatgtctctactgactctgaggataactttgcatatcccaaatct 386
Query: 187 cattaactctgtctaccacatactttgtcatttcacaaaggcccatggagacttacaaaa 246
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 387 cattaactctgtctaccacatactttgtcatttcacaaaggctcatggagacttacaaaa 446
Query: 247 gattacctgctcattgagggaatacactgtttcacttgtaaggcagaagccactattata 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gattacctgctcattgagggaatacactgtttcacttgtaaggcagaagccactattata 506
Query: 307 ctcttcatattgatatatctactatatgttaaaaaa-tctatgttgtagctattaaaatt 365
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 507 ctcttcatattgatatatctactatatgttaaaaaaatctatgttgtagctattaaaatt 566
Query: 366 tcctggatttctgtttattacaacgaaggtcttattattattttagtttttgcaggactt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tcctggatttctgtttattacaacgaaggtcttattattattttagtttttgcaggactt 626
Query: 426 ttcttagttcagttgtgcttcaatctg 452
|||||||| ||||||||||| ||||||
Sbjct: 627 ttcttagtccagttgtgcttgaatctg 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 853
Length adjustment: 10
Effective length of query: 442
Effective length of database: 843
Effective search space: 372606
Effective search space used: 372606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_j15.g1 MSMg01no422_j15.g1 CHROMAT_FILE:
MSMg01no422_j15.g1 PHD_FILE: MSMg01no422_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:05 2005
(527 letters)
>mm_chr4_30490378_30491304
Length = 927
Score = 992 bits (513), Expect = 0.0
Identities = 525/531 (98%), Gaps = 4/531 (0%)
Strand = Plus / Minus
Query: 1 ttaccttgtttctgcttgatgttccacatagtttcctgagacgataatttttgtatattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ttaccttgtttctgcttgatgttccacatagtttcctgagacgataatttttgtatattg 606
Query: 61 gtattcttcctgactttcccattctctttccagaaaatgtgcatttatatttaactggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gtattcttcctgactttcccattctctttccagaaaatgtgcatttatatttaactggct 546
Query: 121 tgctttattacttagttatataatggtgtacctatttaaatgaagacaaaattggttatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgctttattacttagttatataatggtgtacctatttaaatgaagacaaaattggttatc 486
Query: 181 atttttgaaagatattacttaagtgagccttggcccaaaatcaaaatacacaaatgaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atttttgaaagatattacttaagtgagccttggcccaaaatcaaaatacacaaatgaagg 426
Query: 241 tatagttgttgcaaaaaataaattctggtggggaaggaactatggccatctccccattct 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tatagttggtgcaaaaaataaattctggtggggaaggaactatggccatctccccattct 366
Query: 301 gcttgctcacagtggtgatctaactcacaggacttatcttagctggcattctttattcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gcttgctcacagtggtgatctaactcacaggacttatcttagctggcattctttattcca 306
Query: 361 aaatcatcctttacgaatcccagaaatggagtcactgcagcttcacacaagtccagtgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aaatcatcctttacgaatcccagaaatggagtcactgcagcttcacacaagtccagtgga 246
Query: 421 atcagcatgctgtcggaatccatgtactcaccttgagcagagagatgttt----tttgtt 476
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 245 atcagcatgctgtcggaatccatgtactcaccttgagcagagagatgttttttgtttgtt 186
Query: 477 tgtttgtttgtttgtttgtttaggatgggtttgctatatcctcttacctgt 527
|||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 185 tgtttgtttgtttgtttgtttaggatggctttgctatatcctcttacctgt 135
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
