Query= MSMg01no423_g16.b1 MSMg01no423_g16.b1 CHROMAT_FILE:
MSMg01no423_g16.b1 PHD_FILE: MSMg01no423_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:05 2005
(493 letters)
>mm_chr4_14957794_14958685
Length = 892
Score = 907 bits (469), Expect = 0.0
Identities = 484/489 (98%), Gaps = 1/489 (0%)
Strand = Plus / Minus
Query: 5 gaattccactggtgcaggacacaatcagtcacctgcaaggggccaggtgcattttgcaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gaattccactggtgcaggacacaatcagtcacctgcaaggggccaggtgcattttgcaga 633
Query: 65 gagcttaggggatctgggaaataaaattggtttcacagttttaatcatagcactcataca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gagcttaggggatctgggaaataaaattggtttcacagttttaatcatagcactcataca 573
Query: 125 atttagtatttttgtaaaggatgctatttttaaaattgtaggtcagcatcaagttttctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atttagtatttttgtaaaggatgctatttttaaaattgtaggtcagcatcaagttttctc 513
Query: 185 acagttggatttttttttccttagtccactgtgttgaacttgcctttgagaagatttgac 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 acagttgga-ttttttttccttagtccactgtgttgaacttgcctttgagaagatttgac 454
Query: 245 tatgacatatcttcaatttgtgctcttctgttctgacattttgaaagctgtaaccaagat 304
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tatgacatatcttcagtttgtgctcttctgttctgacattttgaaagctgtaaccaagat 394
Query: 305 tataatgtggaagaatgtggtaggcacaggtgagcagtatttttagatacctcattctca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tataatgtggaagaatgtggtaggcacaggtgagcagtatttttagatacctcattctca 334
Query: 365 tgctgatgagctaaagagcacaaacatatatagcataaacccataaagtttgcttagtta 424
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 333 tgctgatgagctaaagagcacaaacatatatagcataaaaccataaagtgtgcttagtta 274
Query: 425 tttgttcttaagagttttgtctttttttcactgataatgtctttgacactgataatggta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 273 tttgttcttaagagttttgtctttttttcactgataatgtctttgacactgatgatggta 214
Query: 485 aacagagcc 493
|||||||||
Sbjct: 213 aacagagcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 892
Length adjustment: 10
Effective length of query: 483
Effective length of database: 882
Effective search space: 426006
Effective search space used: 426006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_g16.g1 MSMg01no423_g16.g1 CHROMAT_FILE:
MSMg01no423_g16.g1 PHD_FILE: MSMg01no423_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:06 2005
(580 letters)
>mm_chr4_14896524_14897503
Length = 980
Score = 1052 bits (544), Expect = 0.0
Identities = 569/580 (98%), Gaps = 5/580 (0%)
Strand = Plus / Plus
Query: 1 attgttgcaatcaagcagtgaaggatgcgtgcttctcatccacccaccccatttatgcct 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 attgttgcaatcaagcagtgaaggacgcgtgcttctcatccacccaccccatttatgcct 260
Query: 61 ttatggcccagtttgatctctgcctctctgtctttgtctttctgtctctctatttccttt 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatggcccagtttgatctctgcctttctgtctttgtctttctgtctctctatttccttt 320
Query: 121 tagttcactttatctacagctcaagtttgtcagacctccatagaacaattcctaacaaag 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagttcactttatctacagctcatgtttgtcagacctccatagaacaattcctaacaaag 380
Query: 181 aggacttaataatatgcatagatctcagattgtgaactaaggcattgtcttaattagagt 240
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 381 aggacttaataatatgcatagatctcagattgtgagctaaggcattgtcataattagagt 440
Query: 241 tttattgctgtgaagagacactatgaccaaggcaactcttttaaaggcaaatatttaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttattgctgtgaagagacactatgaccaaggcaactcttttaaaggcaaatatttaatt 500
Query: 301 tgggctagcttagagtttcagaggttcagtccactatcatcatagcaagaagcatggcag 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggctagcttagagtttcagaggttcagtccactatcatcatagcaagaagcatggcaa 560
Query: 361 cctgcaggcagacatgatgctggagaaggagctgagagttccatatcttgattcgaaggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctgcaggcagacatgatgctggagaaggagctgagagttccatatcttgattcgaaggt 620
Query: 421 agccagcaggcagccagactgtcttctgcaggcaagcagaggaggatgtcttccacactg 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agccagcagg-----agactgtcttctgcaggcaagcagaggaggatgtcttccacactg 675
Query: 481 ggcattttccaaacaaaacaaaaacaaaaacaaaaacaacccttaaggcttgccctacac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ggcattttccaaacaaaacaaaaacaaaaacaaaaacaacccttaaggcttgccctacac 735
Query: 541 agtggcacccttcctcctataaggccacatctactccaac 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agtggcacccttcctcctataaggccacatctactccaac 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
