BAC Information

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BAC

Clone NameMSMg01-424B01
Chromosome4 (Build37)
Map Location 112,375,845 - 112,376,211
singlet/doubletsinglet
Overlap genenone
Upstream geneSpata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540
Downstream geneLOC100040581, A030001H23Rik, LOC433745, LOC545668, LOC230622, LOC100040607, LOC242627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424B01.T7 (MSMg01no424_b01.b1)MSMg01-424B01.TJ (MSMg01no424_b01.g1)
ACCAG518073AG518074
length1,057734
length of high quality
(start - end)
---602 (83 - 684)
definitionCHROMAT_FILE: MSMg01no424_b01.b1 PHD_FILE: MSMg01no424_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:55 2005CHROMAT_FILE: MSMg01no424_b01.g1 PHD_FILE: MSMg01no424_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCGGTACTCCCCCCCCACTCCCAATACATTATCTANTTCTTCCCCNNAT
ANTTTTCTAGTAAATTATGAATACATATTTTTGNACTCCCCCTCCTCTCA
CCGCCCTCTTCTATCTGTACAAAAGAAACAATATCTCTCTCTAATACTTT
CTAGTACAAAAAGCAAACGACCTATCTTCCTCCTGTGTTTTCTCCTTTCT
TTACACTTCACGACTCTATCTGACTTATACAACTAAATTTTATTTCCCTG
CTTTCTTTTCTGTGTCTGCCGTGTTTAGATGATCTGGTGAAAATTTTTAC
AATGCTTTACCCTCCCTATNCTNNTNGAGTCCCCGGGCNCTCCCCTTTTA
TAAAAAATTATAAACCGCCGTGGNCAAAAAAACCCTTTTTTTCCCCCAAA
CCCCCCCCTTTAAAAAATTTTTTTTTTTTCTTTCCTCCTCCCCCCCCAAG
AGAAAAAAAAGAGAGGGNNNNNNNAAAAATTTCCCCCCCCGGTGCCCCGG
GTGGGGAAAAAAAATTTTTTCCCTTTCCCAAAAAACCCCCCGGTTTTAGA
TGCCCCACAAAATTAAACCCCTGGGCGAAAAAATTTGCTCCCCTTTGTGA
AAAATAAAAAAACCCCCAACCCCCTTTTGGGATAGNAAAAAAAAANNAAA
GTAGTTTTTTTTCCCCACAACCCACATTCTCTTCTTTTAAAAATTCTCCA
NTTCCCAAGAGGGGAAAAAATATGTGCCCCAAAAATATCCCAAAAAAAAC
CAAAACTCTCATTGTNAGAAGAAAATTTCTCTCCCAACCCCCTTTTCTCC
NCCAAAGCCCCCAATGTTGTGAAAAGAATTAGTAGGGGGGCGCCTTAAAC
CCCGCGGGGAAANNAAATAAGGGGCCGCTTTTATTTGTATAATTCCCCCA
AGAAATTAGTCNCCTCCCCCCCCTTGTTGGAAAACACACAATAGTAAATA
TTTTGCTCTGTGGTGGCCCCAACAAAGAAGATATAGTTTGGTGTGAAAAA
CAAAAAGAAGAGGGGGAGGAAACACACCCCTCTCNTTTCCCCNNAACTCA
AGAGGGG
NNNNAACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGGGAGAGACAGATAC
AGGTGAGGATTTGTCCCAGAGAGAGGAAGACAGATGGTCACATCTGAGCA
CCAGGGAACCGTCCATTTGGCAGGACATAGAATAAAATAATGGATCATTA
AGTTATGATCTAGTGGTGTAAAACATAAAGTGTTGGTCTAGGCATCTGCA
AATATGTAAGAAGTTTCAGAGTCATTATTTTCGGGAACAAAATGGACAGA
TGGAAAACCCCATGGTTACAGATGGCAAAGCTAACGACAACAAAAGAGTC
CCCAGAATTCAAGACAAATTTTTCTGCAGCTGGCAAAAGTTACACCCCTC
CTCAAGCCTGAGACAAATCATAGTGGTTGTGGAAGCAGCCCTATATCCCA
CACCGTGTTTTAAAAACATTTACATAACATCACTAGGATTTTAAAGAACC
GAGAATTCTCACAAAATATGTGGGGATAAAATTACAGGGCCTAGAGGACC
AGGATTACAGCTTTGAGATGATGTTTTTCATATAGTAGTATAGCTGAACC
CATAAAACCTTATAGTGACATGGTAGTATGGAAGGGGCAAATCTCACAAG
GTTTCACCTTTAGATGAAGAGGTACAAGCAACTCATGGTTCCTGACAAAA
AGAAGAATCAGGCTTTTCCATGAACCAACTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_b01.g1 MSMg01no424_b01.g1 CHROMAT_FILE:
MSMg01no424_b01.g1 PHD_FILE: MSMg01no424_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:55 2005
         (602 letters)



>mm_chr4_112375210_112376211
          Length = 1002

 Score =  679 bits (351), Expect = 0.0
 Identities = 363/367 (98%)
 Strand = Plus / Minus

                                                                        
Query: 236  acagatggcaaagctaacgacaacaaaagagtccccagaattcaagacaaatttttctgc 295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 acagatggcaaagctaacgacaacaaaagagtccccagaattcaagacaaatttttctgc 943

                                                                        
Query: 296  agctggcaaaagttacacccctcctcaagcctgagacaaatcatagtggttgtggaagca 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942  agctggcaaaagttacacccctcctcaagcctgagacaaatcatagtggttgtggaagca 883

                                                                        
Query: 356  gccctatatcccacaccgtgttttaaaaacatttacataacatcactaggattttaaaga 415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882  gccctatatcccacaccgtgttttaaaaacatttacataacatcactaggattttaaaga 823

                                                                        
Query: 416  accgagaattctcacaaaatatgtggggataaaattacagggcctagaggaccaggatta 475
            | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822  atcaagaattctcacaaaatatgtggggataaaattacagggcctagaggaccaggatta 763

                                                                        
Query: 476  cagctttgagatgatgtttttcatatagtagtatagctgaacccataaaaccttatagtg 535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 762  cagctttgagatgatgtttttcatatagtagtatagctgaacccataaaaccttagagtg 703

                                                                        
Query: 536  acatggtagtatggaaggggcaaatctcacaaggtttcacctttagatgaagaggtacaa 595
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 702  acatggtagtatggaaggggcaaatctcacaaggtttcacctttagatgaagagctacaa 643

                   
Query: 596  gcaactc 602
            |||||||
Sbjct: 642  gcaactc 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)