BAC Information

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BAC

Clone NameMSMg01-424B03
Chromosome4 (Build37)
Map Location 63,230,296 - 63,230,801
singlet/doubletsinglet
Overlap gene6330416G13Rik
Upstream geneRgs3, Zfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1
Downstream geneLOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424B03.T7 (MSMg01no424_b03.b1)MSMg01-424B03.TJ (MSMg01no424_b03.g1)
ACCAG518077AG518078
length746753
length of high quality
(start - end)
611 (44 - 654)519 (80 - 598)
definitionCHROMAT_FILE: MSMg01no424_b03.b1 PHD_FILE: MSMg01no424_b03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:55 2005CHROMAT_FILE: MSMg01no424_b03.g1 PHD_FILE: MSMg01no424_b03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATTCC
ACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGA
TGCTGGCGAGGATGTGGAGAAAGGGGAAACACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTTTGGCAGTTCCTCAGA
AAATTGGACATAGTACTACCAGAGAATCCCGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGTCCCAAACGGTAAGAAGAACACATGCTCCACTATGT
TCATAGCAGACTTGTTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGA
ATACTACTCAACTATTTAAAAAATGAATTTATGAAATTCCTAGGCAAATG
GATGGACCTGGAGGGTATCATCCTGAGTGAAGTAACCCAATCACAAAGGA
ACTCGCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTA
GGATACACNAGATATAAGATACNACTTGCCAAACACATGAAATTCAAGAA
GAACGAAGACCCAAGTGTGGACACTTTACCCTTTCTTAGAAATGGG
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAGCCACTTTTGTGT
TTCATTTGAAATTGGGGTGAGGAGGGCTTAGGAGTGACTGACCTCGCTAT
CAAACTTGAGGGCTCACAACTTTTACCCCGGCTCCGGCTCAGTCAGCCAT
CTTCAATAGGCCGACTAAAAGAACCAGTTAAGAATGGAATGCAGAAAAGG
GAGATTTAGTCAATGTGGCCTCACTGGAAAGAGCGACACAGAGACTCAGC
AAACACTCCAGAGGTCCTGAAGGGAGTATTAGAGTTTAAGCACACAGACA
CGGCCAAGCACATCTAAGCAGCCAGGTCAAGATGTGGCCCTGCCCACCAT
TTTTCCACCATCCTCTGGGCTCCAGTCTCATCCTGGATGGTAGCCTAACA
AGTCATTAGAGCTGTGGGACATTTCCCATCATGAGATTCCTAGCAGAGTT
CCCATTTCTTGGGAGTCCGTAGTTTCAGCAGCCTGAGAGACACGAGTGTC
TCTTTAGAATATCCTCATTTCTGCCAGGCCAGTTACAACCTGTTGTCAAG
ATTCACCCAATAAGTATTGAATAGGAGCCATCCCAGGGTCGGCATGGTTT
CCTCCAGGTCCCTGGGAGGTTGTTTGACCCCCACGGTGGTAGGGATATTT
GACAGGTTGCCTCCGATTGTAATTGCCGCTTCTGACAGCCCCCTTGTCTT
CTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_b03.g1 MSMg01no424_b03.g1 CHROMAT_FILE:
MSMg01no424_b03.g1 PHD_FILE: MSMg01no424_b03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:55 2005
         (519 letters)



>mm_chr4_63230084_63231001
          Length = 918

 Score =  934 bits (483), Expect = 0.0
 Identities = 501/507 (98%), Gaps = 1/507 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  cttttgtgtttcatttgaaattggggtgaggagggcttaggagtgactgacctcgctatc 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 cttttgtgtttcatttgaaattggggtgaggagggcttaggagtgactgacctcgctatc 272

                                                                       
Query: 73  aaacttgagggctcacaacttttaccccggctccggctcagtcagccatcttcaataggc 132
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 273 aaacttgagggctcacaacttttaccccggctccggctcagccagccatcttcaataggc 332

                                                                       
Query: 133 cgactaaaagaaccagttaagaatggaatgcagaaaagggagatttagtcaatgtggcct 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cgactaaaagaaccagttaagaatggaatgcagaaaagggagatttagtcaatgtggcct 392

                                                                       
Query: 193 cactggaaagagcgacacagagactcagcaaacactccagaggtcctgaagggagtatta 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |
Sbjct: 393 cactggaaagagcgacacagagactcagcaaacactccagaggtcctgaagggag-agca 451

                                                                       
Query: 253 gagtttaagcacacagacacggccaagcacatctaagcagccaggtcaagatgtggccct 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 452 gagtttaagcacacagacacggccaagcacatctaagcagccaggtcaagatgtggcccc 511

                                                                       
Query: 313 gcccaccatttttccaccatcctctgggctccagtctcatcctggatggtagcctaacaa 372
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gcccaccattttcccaccatcctctgggctccagtctcatcctggatggtagcctaacaa 571

                                                                       
Query: 373 gtcattagagctgtgggacatttcccatcatgagattcctagcagagttcccatttcttg 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gtcattagagctgtgggacatttcccatcatgagattcctagcagagttcccatttcttg 631

                                                                       
Query: 433 ggagtccgtagtttcagcagcctgagagacacgagtgtctctttagaatatcctcatttc 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggagtccgtagtttcagcagcctgagagacacgagtgtctctttagaatatcctcatttc 691

                                      
Query: 493 tgccaggccagttacaacctgttgtca 519
           |||||||||||||||||||||||||||
Sbjct: 692 tgccaggccagttacaacctgttgtca 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 918
Length adjustment: 10
Effective length of query: 509
Effective length of database: 908
Effective search space:   462172
Effective search space used:   462172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)