ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACAAGTTTATCGGATCTATTATATCTAAGAGACACAGTATCCCACAA
ATCTCCTTCACTCTCTGGCTCTTTCAGTCTTTCTGCCCTCTCTTCATTGA
TGTTCCTTGAGCGTTCTTGGGCGAAGGTACAATACTGCTGTCTCATTTGG
TATTGAACACTCTGCAGTCACTAATTCTCTTCACTTTGACCAGTTATGTA
TTTACCTCCACTTCCTGCAGAAGGAAGCTTCTCTGGCACACCCTCTTTGT
TATCTTCCCTCTTCCATTAAAAACACTGTGCTCTTCTTGCTGACTGATAA
ACTGTTTTGCAGTGTCTTGTCTTTTTTCTTCCTCTCTACAGCTGTCTCTT
TAAAAAGTCATGTAGTTTAGGGCTAATGAAATGAGTCAGGTATGGGCTAT
CAAGGCTGCCAACTTGACTTCAGTCCCTAGAACCCACATGATGGAAGCAG
AGAGATAATTCCTGAAGGTTGATTTCTAACCTCTGCAAATGTACTACAAA
CTAAGACACACACACACAAACACACACACACACACTTAATAAATAAATAA
GTAAATGTAATATCTGTTTTTTAAAAAATAGAACAATTGGGTTTTTTTTG
TTAGAAAATTGTTGCTCATTATGTATTAACATAAAAAGGTTGAAGATGTT
GGTTAATTACATTTACATTTTAATTTTTAAACCCTAAATTTCTATGTGAA
G

CGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTGCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGA
TAAGTTGATATTATCCCCAAACCTAGGATACCCTAGATATAAGATATAAT
TTGCTAAACACATGTAACTCATGGAGAATGAAGACTGAAGTGTGTACACT
ATGCCCN

Query= MSMg01no424_i04.b1 MSMg01no424_i04.b1 CHROMAT_FILE:
MSMg01no424_i04.b1 PHD_FILE: MSMg01no424_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:29 2005
         (531 letters)



>mm_chr4_91443414_91444344
          Length = 931

 Score =  967 bits (500), Expect = 0.0
 Identities = 521/528 (98%), Gaps = 2/528 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacaagttta-tcggatctattatatctaagagacacagtatcccacaaatctcc 63
           ||||||||||||  | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaagtgcagt-ggatctattatatctaagagacacagtatcccacaaatctcc 263

                                                                       
Query: 64  ttcactctctggctctttcagtctttctgccctctcttcattgatgttccttgagcgttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcactctctggctctttcagtctttctgccctctcttcattgatgttccttgagcgttc 323

                                                                       
Query: 124 ttgggcgaaggtacaatactgctgtctcatttggtattgaacactctgcagtcactaatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgggcgaaggtacaatactgctgtctcatttggtattgaacactctgcagtcactaatt 383

                                                                       
Query: 184 ctcttcactttgaccagttatgtatttacctccacttcctgcagaaggaagcttctctgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctcttcactttgaccagttatgtatttacctccacttcctgcagaaggaagcttctctgg 443

                                                                       
Query: 244 cacaccctctttgttatcttccctcttccattaaaaacactgtgctcttcttgctgactg 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 cacaccctctttgttatcttccctcttccattaacaacactgtgctcttcttgctgactg 503

                                                                       
Query: 304 ataaactgttttgcagtgtcttgtcttttttcttcctctctacagctgtctctttaaaaa 363
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ataaactgtttttcagtgtcttgtcttttttcttcctctctacagctgtctctttaaaaa 563

                                                                       
Query: 364 gtcatgtagtttagggctaatgaaatgagtcaggtatgggctatcaaggctgccaacttg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtcatgtagtttagggctaatgaaatgagtcaggtatgggctatcaaggctgccaacttg 623

                                                                       
Query: 424 acttcagtccctagaacccacatgatggaagcagagagataattcctgaaggttgatttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acttcagtccctagaacccacatgatggaagcagagagataattcctgaaggttgatttc 683

                                                           
Query: 484 taacctctgcaaatgtactacaaactaagacacacacacacaaacaca 531
           |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 684 taacctctgcaaatgtactacaaactaagacacacacacacacacaca 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)